Last updated:2013.6.17.

DDBJ staff publications (1997)

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*Bold are CIB-DDBJ members.

  • Endo T., Imanishi T., Gojobori T. and Inoko H. (1997) Evolutionary significance of intra-genome duplications on human chromosomes. Gene 205: 19-27.
  • Futatsuki T., Kawanishi Y., Naito K., Miyazaki S. and Sugawara H. (1997) Efficient Computation of Sequence Analysis in a Vector-Parallel Computer for the Study of Molecular Evolution. In Genome Informatics 1997. Universal Academy Press (Tokyo). 264-265.
  • Goto K., Yamamoto H., Tamura T., Okayama T., Koike T., Miyazaki S., Mori H., Gojobori T. and Sugawara H. (1997) Visualization of Sequence and Biological Data in DNA Data Bank of Japan: Genome Information Broker and the Enhancement of SAKURA. In Genome Informatics 1997. Universal Academy Press (Tokyo). 236-237.
  • Gready J.E., Ranganathan S., Schofield P.R., Matsuo Y. and Nishikawa K. (1997) Predicted structure of the extracellular region of ligand-gated ion-channel receptors shows SH2-like and SH3-like domains forming the ligand binding site. Prot. Sci. 6: 983-998.
  • Ito M., Matsuo Y. and Nishikawa K. (1997) Prediction of protein secondary structure using the 3D-1D compatibility algorithm. CABIOS 13: 415-423.
  • Khan M.L.A., Gogonea C.B., Siddiqui Z.K., Ali M.Y., Kikuno R., Nishikawa K. and Siddiqui S.S. (1997) Molecular cloning and expression of the Caenorhabditis elegans klp-3, an ortholog of C terminus motor kinesins Kar3 and ncd. J. Mol. Biol. 270: 627-639.
  • Kitano T., Matsuoka N., and Saitou N. (1997) The phylogenetic relationship of the genus Oncorhynchus species inferred from nuclear and mitochondrial markers. Genes and Genetic Systems 72 (1): 25-34.
  • Kurihara T., Sakuma M. and Gojobori T. (1997) Molecular evolution of myelin proteolipid protein. Biochemical and Biophysical Research Communications. 237: 559-561.
  • Miyazaki S., Shimura J., Hirose S., Sanokawa R., Tsurui H., Wakiya M., Sugawara H. and Shirai T. (1997) Is structural flexibility of antigen-binding loops involved in the affinity maturation of anti-DNA antibodies? International Immunology 9: 771-777.
  • Mizokami M., Orito E., Ohba K., Ikeo K., Lau J.Y.N. and Gojobori T. (1997) Constrained evolution of hepatitis B virus with overlapping genes. Journal of Molecular Evolution (Special Issue) 44 (1): 83-90.
  • Mizuki N., Ohno S., Ando H., Sato T., Imanishi T., Gojobori T., Ishihara M., Ota M., Geng Z., Geng L., Li G., Kimura M. and Inoko H. (1997) Major histocompatibility complex class II allelles in Kazak and Han populations in the Silk Route of northwestern China. Tissue Antigens 50: 527-534.
  • Nakamura Y., Tateno Y. and Gojobori T. (1997) Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Research 25: 244-245.
  • Nakashima H., Nishikawa K. and Ooi T. (1997) Differences in dinucleotide frequencies of human, yeast, and E. coli genes. DNA Res. 4: 185-192.
  • Okamoto Y., Shiosaki K., Eda Y., Tokiyoshi S., Yamaguchi Y., Gojobori T., Hachimori T., Yamazaki S. and Honda M. (1997) Father-to-mother-to-infant transmission of HIV-1: clonally transmitted isolate of infant mutates more rapidly than that of the mother and rapidly loses reactivity with neutralizing antibody. Microbiol Immunol 41: 131-138.
  • OOta S. and Saitou N. (1997) Reconstruction of maximum likelihood phylogenetic trees in parallel enviromnent using logic programming. In Miyano S. and Takagi T. (eds.), Genome Informatics 1997, Universal Academy Press, Tokyo 326-327.
  • Omoto K. and Saitou N. (1997) Genetic origins of the Japanese: A partial support for the "dual structure hypothesis". American Journal of Physical Anthropology 102 (4): 437-446.
  • Ota M. and Nishikawa K. (1997) Assessment of the pseudo-energy potential by the best-five test: a new use of the three-dimensional profiles of proteins. Prot. Eng. 10: 339-351.
  • Ota M., Isogai Y. and Nishikawa K. (1997) Structural requirement of highly-conserved residues in globins. FEBS Lett. 415: 129-133.
  • Saitou N. and Yamamoto F.-I. (1997) Evolution of primate ABO blood group genes and their homologous genes. Molecular Biology and Evolution 14 (4): 399-411.
  • Sato S., Masuya H., Numakunai T., Satoh N., Ikeo K., Gojobori T., Tamura K., Ide H., Takeuchi T. and Yamamoto H. (1997) Ascidian tyrosinase gene: Its unique structure and expression in the developing brain. Developmental Dynamics 208: 363-374.
  • Sumikawa H., Fukuhara K., Suzuki E., Matsuo Y. and Nishikawa K. (1997) Tertiary structural models for human interleukin-6 and evaluation by a sequence-structure compatibility method and NMR experimental information. FEBS Lett. 404: 234-240.
  • Suyama M., Matsuo Y. and Nishikawa K. (1997) Comparison of protein structures using 3D profile alignment. J. Mol. Evol. 44 (Suppl. 1): S163-S173.
  • Suzuki Y. and Gojobori T. (1997) The origin and evolution of ebola and marburg viruses. Mol. Biol. Evol. 14: 800-806.
  • Perriere G., Moszer I., and Gojobori T. (1997) The NRSub database: update 1997. Nucleic Acids Reseach 25: 53-56.
  • Tanaka H., Ren F., Okayama T. and Gojobori T. (1997) Inference of molecular phylogenetic tree based on minimum model-based complexity method. In Proceedings of Fifth international conference on intelligent systems for
    molecular biology. ISMB 97, Halkidiki, Greece / American Association for Artificial Intelligence. 319-328.
  • Tateno Y. and Gojobori T. (1997) DNA Data Bank of Japan in the age of information biology. Nucleic Acids Reseach 25: 14-17.
  • Tateno, Y., Ikeo K., Imanishi T., Watanabe H., Endo T., Yamaguchi Y., Suzuki Y., Takahashi K., Tsunoyama K., Kawai M., Kawanishi Y., Naitou K. and Gojobori T. (1997) Evolutionary motif and its biological and structural significance. Journal of Molecular Evolution (Special Issue) 44 (1): 38-43.
  • Tenzen T., Yamagata T., Fukagawa T., Sugaya K., Ando A., Inoko H., Gojobori T., Fujiyama A., Okumura K. and Ikemura T. (1997) Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex. Mol. Cel. Biol. 17: 4043-4050.
  • Watanabe H., Gojobori T. and Miura K. (1997) Bacterial features in the genome of Methanococcus Jannaschii in terms of gene composition and biased base composition in ORFs and their surrounding regions. Gene 205: 7-18.
  • Watanabe H., Itoh T., Mori H. and Gojobori T. (1997) Genome plasticity as a paradigm of eubacteria evolution. Journal of Molecular Evolution 44 (1): 57-64.
  • Yamaguchi Y. and Gojobori T. (1997) Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts. Proc. Natl. Acad. Sci. U.S.A. 94: 1264-1269.