DDBJ staff publications (1999)

| 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 |


*Bold are CIB-DDBJ members.

  • Baba T., Shiina T., Ando A., Imanishi T., Matsuno N., Skurai E., Nagao T., Tanaka K., Gojyobori T. and Inoko H. (1999) Isolation and characterization of a pig major histocompatibility complex (SLA) class II DNA cDNA clone. Immunogenetics. 49 (10): 915-917.
  • Bellgard M. I. and Gojobori T. (1999) Identification of a ribonuclease H gene in both Mycoplasma genitalium and Mycoplasma pneumoniae by a new method for exhaustive identification of ORFs in the complete genome sequences. FEBS Lett. 445: 6-8.
  • Bellgard M. I. and Gojobori T. (1999) Inferring the direction of evolutionary changes of genomic basecomposition. Trends Genet. 15 (7): 254-256.
  • Bellgard M. I. and Gojobori T. (1999) Significant differences between the G+C content of synonymous codons in orthologous genes and the genomic G+C content. Gene. 238 (1): 33-37.
  • Bellgard M. I., Itoh T., Watanabe H., Imanishi T. and Gojobori T. (1999) Dynamic evolution of genomes and the concept of genome space. Ann N Y Acad Sci. 870: 293-300.
  • Fukami-Kobayashi K., Tateno Y. and Nishikawa K. (1999) Domain dislocation: a change of core structure in periplasmic binding proteins in their evolutionary history. J. Mol. Biol. 286: 279-290.
  • Gaudieri S., Dawkins R. L., Habara K., Kulski J. K., and Gojobori T. (1999) Nucleotide diversity within the human major histocompatibility complex: Function of hitch-hiking effect, duplications, indels and recombination. in 6th International workshop on MHC evolution. Hayama:186-200 Springer.
  • Gaudieri S., Kulski J. K., Dawkins R. L. and Gojobori T. (1999) Different evolutionary histories in two subgenomic regions of the major histocom patibility complex. Genome Res. 9 (6): 541-549.
  • Gaudieri S., Kulski J. K. , Dawkins R. L. and Gojobori T. (1999) Extensive nucleotide variability within a 370 kb sequence from the central region of the major histocompatibility complex. Gene. 238 (1): 157-161.
  • Gehring W. J. and Ikeo K. (1999) Pax 6: mastering eye morphogenesis and eye evolution. Trends Genet. 15 (9): 371-377.
  • Gojobori T. (1999) Evolution, in The Encyclopedia of Molecular Biology, T.E. Creighton, Editor. John Wiley & Sons: NY.
  • Gojobori T. (1999) Part VI. Introduction, in Molecular Starategies in Biological Evolution, L.H. Caporale, Editor. Ann N Y Acad Sci. : 292.
  • Gojobori T. (1999) Part VI. Summary, in Molecular Starategies in Biological Evolution, L.H. Caporale, Editor. Ann N Y Acad Sci. : 339-340.
  • Hatta Y., Ohashi J., Imanishi T., Kamiyama H., Iha M., Simabukuro T., Ogawa A., Tanaka H., Akaza T., Gojobori T., Juji T. and Tokunaga K. (1999) HLA genes and haplotypes in Ryukyuans suggest recent gene flow to the Okinawa Islands. Hum Biol. 71 (3): 353-365.
  • Hayasaka D., Suzuki Y., Kariwa H., Ivanov L., Volkov V., Demenev V., Mizutani T., Gojobori T. and Takashima I. (1999) Phylogenetic and virulence analysis of tick-borne encephalitis viruses from Japan and far-eastern Russia. J Gen Virol. 80 (12): 3127-3135.
  • Isogai Y., Ota M., Fujisawa T., Izuno H., Mukai M., Nakamura H., Iizuka T. and Nishikawa K. (1999) Design and synthesis of a globin fold. Biochemistry. 38 (23): 7431-7443.
  • Itoh T., Takemoto K., Mori H. and Gojobori T. (1999) Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Mol. Biol. Evol. 16: 332-346.
  • Itoh T., Okayama T., Hashimoto H., Takeda J.-i., Davis R. W., Mori H. and Gojobori T. (1999) A low rate of nucleotide changes in Escherichia coli K-12 estimated from a comparison of the genome sequences between two different substrains. FEBS Lett. 450: 72-76.
  • Jin F., Saitou N., Ishida T., Sun C-S., Pan I-H., Omoto K., and Horai S. (1999) Population genetic studies on nine aboriginal ethnic groups of Taiwan. I Red cell enzyme systems. Anthropological Science 107 (3): 229-246.
  • Jin F., Saitou N., and Omoto K. (1999) Population genetic studies on the Chinese. In Omoto K. (ed.),   "Interdisciplinary Perspectives on the Origin of Japanese", International Research Center for Japanese Studies, Kyoto, Japan 15-24.
  • Kaneko M., Kudo T., Iwasaki H., Ikehara Y., Nishihara S., Nakagawa S., Sasaki K., Shiina T., Inoko H., Saitou N., and Narimatsu H. (1999) alpha1-3-Fucosyltransferase IX (Fuc-TIX) is very highly conserved between human
    and mouse; molecular cloning, characterization and tissue distribution of human Fuc-TIX. FEBS Letters 452: 237-242.
  • Kaneko M., Kudo T., Iwasaki H., Shiina T., Inoko H., Kozaki T., Saitou N. and Narimatsu H. (1999) Assignment of the human alpha 1,3-fucosyltransferase IX (FUT9) gene to chromosome band 6q16 by in situ hybridization. Cytogenetics and Cell Genetics 86: 329-330.
  • Kawabata T., Ota M. and Nishikawa K. (1999) The protein mutant database. Nucl. Acids Res. 27: 355-357.
  • Kitano T. and Saitou N. (1999) Evolution of Rh blood group genes have experienced gene conversions and positive selection. Journal of Molecular Evolution 49 (5): 615-626.
  • Kobayashi K., Iwasaki M., Suzuki Y., Suzuki H., and Saitou N. (1999) An analysis of polymorphism for the ABO blood group genes in a Japanese population based on polymerase chain reaction. Anthropological Science 107(2): 109-121.
  • Luo C., Morishita T., Satou K., Tateno Y., Nakajima K. and Nobusawa E. (1999) Evolutionary pattern of influenza B viruses based on the HA and NS genes during 1940 to 1999: origin of the NS genes after 1997. Arch Virol. 144 (10): 1881-1891.
  • Miyazaki S. and Sugawara H. (1999) From linking to integration of biological databases, The International Joint Workshop for Studies on BIODIVERSITY (Species 2000, CODATA and Global Environment Tsukuba), Tsukuba.
  • Miyazaki S. and Sugawara H.,(1999) Reconstruction of large-scale phylogenetic trees: problems and solutions,6th International Congress on Amino Acids, 17 (1) :119.
  • Mizokami M., Imanishi T., Ikeo K., Suzuki Y., Orito E., Kumada T., Ueda R., Iino S., and Nakano T. (1999) Mutation patterns for two flaviviruses: hepatitis C virus and GB virus C/hepatitis G virus. FEBS Lett. 450 (3): 294-298.
  • Nagano N., Ota M. and Nishikawa K. (1999) Strong hydrophobic nature of cysteine residues in proteins. FEBS Lett. 1458 (1): 69-71.
  • Nakamura Y., Gojobori T., and Ikemura T. (1999) Codon usage tabulated from the international DNA sequence databases; its status 1999. Nucl. Acids Res. 27: 292.
  • Nishikawa K. (1999) Protein structure prediction The Encyclopedia of Molecular Biology (Ed., T.E. Creighton), John Wiley & Sons, Inc.
  • Ophir R., Itoh T., Graur D. and Gojobori T. (1999) A simple method for estimating the intensity of purifying selection in protein-coding genes. Mol. Biol. Evol. 16: 49-53.
  • OOta S. and Saitou N. (1999) Phylogenetic relationship of muscle tissues deduced from superimposition of gene trees. Mol. Biol. Evol. 16 (6): 856-867.
  • Oota H., Saitou N., Kurosaki K., Pookajorn S., Ishida T, Matsushita T., and Ueda S. (1999) Ancient DNA: a New Strategy for Studying Population History. In Omoto K. (ed.), "Interdisciplinary Perspectives on the Origin of Japanese", International Research Center for Japanese Studies, Kyoto, Japan 25-41.
  • Oota H., Saitou N., Matsushita T. and Ueda S. (1999) Molecular genetic analysis of a 2,000-year old human population in China. American Journal of Human Genetics 64 (1): 250-258.
  • Ota M., Kawabata T., Kinjo A. R. and Nishikawa K. (1999) Cooperative approach for the protein fold recognition.
    Proteins. 37 (S3): 126-132.
  • Ota M. and Nishikawa K. (1999) Feasibility in the inverse protein folding protocol. Protein Sci. 8: 1001-1009.
  • Ren F., Hiroshi T., Okayama T. and Gojobori T. (1999) The application of model-based complexity inference method to molecular evolution analysis. Medinfo. 9 (1): 367-371.
  • Ren F., Tanaka H., Okayama T., and Gojobori T. (1999) Reconstructing molecular phylogenetic tree with multifurcation by using minimum complexity principle. DNA and Molecular Computing. : 1825-1828.
  • Robertson B., Myers G., Howard C., Brettin T., Bukh J., Gaschen B., Gojobori T., Maertens G., Mizokami M., Nainan O., Netesov S., Nishioka K., Shin i T., Simmonds P., Smith D., Stuyver L. and Weiner A. (1999) Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization. International Committee on Virus Taxonomy. Arch Virol. 143 (12): 2493-2503.
  • Sato H., Koide T., Ishiguro S.-I., Tamai M., Saitou N. and Shiroishi T. (1999) The organization of the type I keratin genes in the mouse Krt1 domain. Genomics 56: 303-309.
  • Sato S., Toyoda R., Katsuyama Y., Saiga H., Numakunai T., Ikeo K., Gojobori T., Yajima I. and Yamamoto H. (1999) Related Articles Structure and developmental expression of the ascidian TRP gene: insights into the evolution of pigment cell-specific gene expression. Dev Dyn. 215 (3): 225-237.
  • Sawada H., Suzuki F., Matsuda I., and Saitou N. (1999) Phylogenetic analysis of Pseudomonas syringe pathovar suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster. Journal of Molecular Evolution 49 (5): 627-644.
  • Shiina T., Oka A., Imanishi T., Hanzawa K., Gojobori T., Watanabe S. and Inoko H. (1999) Multiple class I loci expressed by the quail MHC. Immunogenetics 49: 456-460.
  • Shiina T., Shimizu C., Oka A., Teraoka Y., Imanishi T., Gojobori T., Hanzawa K., Watanabe S. and Inoko H. (1999) Gene organization of the quail major histocompatibility complex (MhcCoja) class I gene region. Immunogenetics 49: 384-394.
  • Sugawara H. and Miyazaki S. (1999) An information system for data integration and polyphasic analysis of microbes, Proceedings of 99th General Meeting of the American Society for Microbiology, Chicago
  • Sugawara H. and Miyazaki S. (1999) Evolution of genes, genomes and species, The International Joint Workshop for Studies on BIODIVERSITY (Species 2000, CODATA and Global Environment Tsukuba), Tsukuba.
  • Sugawara H. (1999) Links between microbial resources and gene sequences, IXth International Congress of Bacteriology & Applied Microbiology, Sydney
  • Sugawara H., Miyazaki S., Gojobori T. and Tateno Y. (1999) DNA Data Bank of Japan dealing with large-scale data submission. Nucl. Acids Res. 27: 25-28.
  • Suzuki Y. and Gojobori T. (1999) A method for detecting positive selection at single amino acid sites. Mol Biol Evol. 16 (10):1315-1328.
  • Suzuki Y., Katayama K., Fukushi S., Kageyama T., Oya A., Okamura H., Tanaka Y., Mizokami M. and Gojobori T. (1999) Slow evolutionary rate of GB virus C/Hepatitis G virus. J. Mol. Evol. 48: 383-389.
  • Takano K., Ota M., Ogasahara K., Yamagata Y., Nishikawa K. and Yutani K. (1999) Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng. 12 (8): 663-672.
  • Takezaki N. and Gojobori T. (1999) Correct and incorrect vertebrate phylogenies obtained by the entire mitochondrial DNA sequences. Mol. Bol. Evol. 16: 590-601.
  • Tanaka H., Ren F., Okayama T., and Gojobori T. (1999) Topology selection in unrooted molecular phylogenetic tree by minimum model-based complexity method. in Pacific Symposium on Biocomputing'99. Hawaii, USA.
  • Tazaki A., Gaudieri S., Ikeo K., Gojobori T., Watanabe K. and Agata K. (1999) Related Articles, Protein, Nucleotide Neural network in planarian revealed by an antibody against planarian synaptotagmin homologue. Biochem Biophys Res Commun. 260 (2): 426-432.
  • Watanabe M., Sumida N., Murakami S., Anzai H., Thompson C. J., Tateno Y. and Murakami T. (1999) A phosphate-induced gene which promotes Penicillium mediated bioconversion ofcis-propenylphosphonic acid to Fosfomycin. Applied and Environmental Microbiology 65: 1036-1044.
  • Yamazaki M., Tateno Y. and Inoko H. (1999) Genomic organization around the centromeric end of the HLA class I region: Large-scale sequence analysis. J. Mol. Evol. 48: 317-327.

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