DDBJ staff publications (2000)

| 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 |


*Bold are CIB-DDBJ members.

  • Abola, E.E., Bairoch, A., Baker, W.C., Beck, S., Benson, D.A., Berman, H., Cameron, G., Cantor, C., Doubet, S., Hubbbard, T.J.P, Jones, T.A., Kleywegt, G.J. Kolaskar, A.S., Kuik, Van A., Lesk, A.M., Mews, H.-W., Neuhaus, D., Pfeiffer, F., TenEyck, L.F., Simpson, R.J., Stosser, G., Sussman, J.L., Tateno, Y., Tsugita, H., Ulrich, E.L., and Viegenthart, J.F.G. (2000) Quality control in data banks for molecular biology. BioEssays. 22:1024-1034.
  • Akihito, Iwata, A., Kobayashi, T., Ikeo, K., Imanishi, T., Ono, H., Umehazra, Y., Hamamatsu, C., Sugiyama, K., Ikeda, Y., Sakamoto, K., Fumihito, A., Ohno, S., and Gojobori, T. (2000) Evolutionary aspects of gobioid fishes based upon a phylogenetic analysis of mitochondrial cytochrome B genes. Gene. 259(1-2):5-15.
  • Fukami-Kobayashi, K., Nishikawa, K. and Siddiqui, S.S. (2000) Expression and cDNA cloning of klp-12 gene encoding an ortholog of the chichen chromokinesin, mediatingchromosome segregation in Caenorhabditis elegans. J. Bio chem. Mol. Biol. 33:138-146.
  • Gaudieri, S., Dawkins, R.L., Habara, K., Kulski, J.K., and Gojobori, T. (2000) SNP profile within the human major histocompatibility complex reveals an extreme and interrupted level of nucleotide diversity. Genome Research. 10(10):1579-1586.
  • Gojobori, T. (2000) Susumu Ohno 1928-2000. GENE. 259(1-2):2-3.
  • Isogai, Y., Ishii, A., Fujisawa, T., Ota, M., and Nishikawa, K. (2000) Redesign ofartificial globins: Effects of residue replacements at hydrophobic sites onthe structural properties. Biochemistry. 39(19):5683-5690.
  • Isogai, Y., Ishii, A., Ishida, M., Mukai, M., Ota., M., Nishikawa, K., and Iizuka, T. (2000) Structural and functional properties of designed globins. Proc. Indian Acad. Sci. (Chem. Sci.) 112:215-221.
  • Kawabata, T., and Nishikawa, K. (2000) Protein structure comparison using the Markov transition matrix of evolution. PROTEINS. 41(1):108-122.
  • Kawabata, T., Arisaka, F., and Nishikawa, K. (2000) Structural/functional assignment of bacteriophage T4 unknown proteins by iterative database searches. GENE. 259(1-2):223-233.
  • Khan, M.L.A., Yusuf Ali, M., Siddiqui, Z.K., Shakir, M.A., Ohnishi, H., Nishikawa, K., and Siddiqui, S.S. (2000) C. elegans KLP-11/OSM-3/KAP-1:Orthologs of the sea urchin kinesin-II, and mouse KIF3A/KIFB/KAP3 kinesin complexes. DNA. Res. 7:121-125.
  • Kikuchi M., Misu S., Imanishi, T., and Saitou, N. (2000) CAMUS DB: Development of structural database for homology search. In Miyano S., Shamir R., and Takagi T. (eds.), "Currents in Computational Molecular Biology", Universal Academy Press, Tokyo, pp. 80-81.
  • Kitano, T., Noda, R., Sumiyama, K., Ferrell R. E., and Saitou, N. (2000) Gene diversity of chimpanzee ABO blood group elucidated from intron 6 sequences. Journal of Heredity. 91(3):211-214.
  • Kitano, T. and Saitou, N. (2000) Evolutionary history of the Rh blood group-related genes in vertebrates. Immunogenetics, 51(7) (published in online). Full text in Immunogenetics homepage
  • Miyazaki, S., Hashimoto, H., Shimada, A., Tateno, Y. and Sugawara, H. (2000) A new file format and tools for the large-scale data submission to DNA Data Bank of Japan (DDBJ), Currents in Computational Molecular Biology. 60-61.
  • Miyazaki, S., Mashima, J., Mizunuma, T., Sugawara, H., Tateno, Y., and Gojobori, T. (2000) Large-scale submission of mouse EST data and their handling at the DNA Data Bank of Japan (DDBJ)., "Proceedings of The 14th International Mouse Genome Conference", Tokyo.178.
  • Nakane, S., Shirabe, S., Moriuchi, R., MIzokami, A., Furuya, T., Nishiura, Y., Okazaki, S., Nakamura, N., Suzuki, Y., Nakamura, T., Katamine, S., and Gojobori, T. (2000) Comparative molecular analysis of HTLV-I proviral DNA in HTLV-I infected members of a family with a discordant HTLV-I associated myelopathy in monozygotic twins. Journal of Neuro Virology 6:275-283.
  • Nakamura Y., Gojobori T., and Ikemura T. (2000) Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucl. Acids Res. 28(1): 292.
  • Nakashima, H., and Nishikawa, K. (2000) The genomic DNA sequences of various species are distinctively distributed in nucleotide compostion space. Res. Comm. In Biochem, Cell & Mol. Biol. 4:25-45
  • Noda R., Kitano T., Takenaka O., and Saitou N. (2000) Evolution of the ABO blood group gene in Japanese macaque. Genes and Genetic Systems, 75(3):141-147.
  • Ogura, A., Imanishi, T., Ikeo, K., and Gojobori, T. (2000) Comparative genomics of mouse ESTs with particular reference to evolution of mammalian genomes. Proceedings of The 14th International Mouse Genome Conference, Tokyo.176.
  • Ota, K., Kobayashi, T., Ueno, K., and Gojobori, T. (2000) Evolution of heteromorphic sex chromosomes in the order Aulopiformes. GENE. 259(1-2):25-30.
  • Pineda, D., Gonzalez, J., Callaerts, P., Ikeo, K., Gehring, WJ., and Salo, E. (2000) Searching for the prototypic eye genetic network: Sine oculis is essential for eye regeneration in planarians. Proc Natl Acad Sci USA. 97(9):4525-4529.
  • Saitou N. (2000) Programs for constructing phylogenetic trees and networks of closely related sequences. In Iwatuki.K. (ed.), "IIAS International Symposium on Biodiversity", International Institute for Advanced Studies, Kyoto. 45-50.
  • Seki, M., Higashiyama, Y., Mizokami, A., Kadota, J.-I., Moriuchi, R., Kohno, S., Suziki, Y., Takahashi, K., Gojobori, T., and Katamine, S. (2000) Up-regulation of human T lymphotropic virus type 1 (HTLV-1) tax/rex mRNA in infected lung tissues. Clin Exp Immunol. 120(3):488-498.
  • Shimizu, N., and Gojobori, T. (2000) How can human and simian immunodeficiency viruses utilize chemokine receptors as their coreceptors? GENE. 259(1-2):199-205.
  • Sugawara, H. and Miyazaki, S. (2000) A workbench for the research and development of biological diversity, Currents in Computational Molecular Biology. 58-59.
  • Suzuki, Y.,Yamaguchi-Kabata, Y.,and Gojobori, T. (2000) Nucleotide substitution rates of HIV-1. AIDS Reviews. 2(1):39-47.
  • Tateno Y., Miyazaki S., Ota M., Sugawara H. and Gojobori T. (2000) DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams. Nucleic Acids Res. 28 (1): 24-26.
  • Toyoda, R., Sato, S., Ikeo, K., Gojobori, T., Numakunai, T., Goding, CR., and Yamamoto, H. (2000) Pigment cell-specific expression of the tyrosinase gene in ascidians has a different regulatory mechanism from vertebrates. Gene. 259(1-2):159-170.
  • Wada, Y., Imanishi, T., and Gojobori, T. (2000) Estimating the number of mouse genes and the duplicated regions within the mouse genome. Proceedings of The 14th International Mouse Genome Conference, Tokyo. 24.
  • Wang L., Oota H., Saitou N., Jin F., Matsushita T., and Ueda S. (2000) Genetic structure of a!!2500-year-old human population in China and its spatiotemporal changes. Molecular Biology and Evolution, 17(9):1396-1400.
  • Yamaguchi-Kabata, Y., and Gojobori, T. (2000) Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes. J.Virology. 74(9):4335-4350.

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