DDBJ スタッフの発行物(2000年)

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*太字が DDBJ スタッフです

  • Abola, E.E., Bairoch, A., Baker, W.C., Beck, S., Benson, D.A., Berman, H., Cameron, G., Cantor, C., Doubet, S., Hubbbard, T.J.P, Jones, T.A., Kleywegt, G.J. Kolaskar, A.S., Kuik, Van A., Lesk, A.M., Mews, H.-W., Neuhaus, D., Pfeiffer, F., TenEyck, L.F., Simpson, R.J., Stosser, G., Sussman, J.L., Tateno, Y., Tsugita, H., Ulrich, E.L., and Viegenthart, J.F.G. (2000) Quality control in data banks for molecular biology. BioEssays. 22:1024-1034.

  • Akihito, Iwata, A., Kobayashi, T., Ikeo, K., Imanishi, T., Ono, H., Umehazra, Y., Hamamatsu, C., Sugiyama, K., Ikeda, Y., Sakamoto, K., Fumihito, A., Ohno, S., and Gojobori, T. (2000) Evolutionary aspects of gobioid fishes based upon a phylogenetic analysis of mitochondrial cytochrome B genes. Gene. 259(1-2):5-15.

  • Fukami-Kobayashi, K., Nishikawa, K. and Siddiqui, S.S. (2000) Express ion and cDNA cloning of klp-12 gene encoding an ortholog of the chichen chromokinesin, mediatingchromosome segregation in Caenorhabditis elegans. J. Bio chem. Mol. Biol. 33:138-146.

  • Gaudieri, S., Dawkins, R.L., Habara, K., Kulski, J.K., and Gojobori, T. (2000) SNP profile within the human major histocompatibility complex reveals an extreme and interrupted level of nucleotide diversity. Genome Research. 10(10):1579-1586.

  • Gojobori, T. (2000) Susumu Ohno 1928-2000. GENE. 259(1-2):2-3.

  • Isogai, Y., Ishii, A., Fujisawa, T., Ota, M., and Nishikawa, K. (2000) Redesign ofartificial globins: Effects of residue replacements at hydrophobic sites onthe structural properties. Biochemistry. 39(19):5683-5690.

  • Isogai, Y., Ishii, A., Ishida, M., Mukai, M., Ota., M., Nishikawa, K., and Iizuka, T. (2000) Structural and functional properties of designed globins. Proc. Indian Acad. Sci. (Chem. Sci.) 112:215-221.

  • Kawabata, T., and Nishikawa, K. (2000) Protein structure comparison using the Markov transition matrix of evolution. PROTEINS. 41(1):108-122.

  • Kawabata, T., Arisaka, F., and Nishikawa, K. (2000) Structural/functional assignment of bacteriophage T4 unknown proteins by iterative database searches. GENE. 259(1-2):223-233.

  • Khan, M.L.A., Yusuf Ali, M., Siddiqui, Z.K., Shakir, M.A., Ohnishi, H., Nishikawa, K., and Siddiqui, S.S. (2000) C. elegans KLP-11/OSM-3/KAP-1:Orthologs of the sea urchin kinesin-II, and mouse KIF3A/KIFB/KAP3 kinesin complexes. DNA. Res. 7:121-125.

  • Kikuchi M., Misu S., Imanishi, T., and Saitou, N. (2000) CAMUS DB: Development of structural database for homology search. In Miyano S., Shamir R., and Takagi T. (eds.), "Currents in Computational Molecular Biology", Universal Academy Press, Tokyo, pp. 80-81.

  • Kitano, T., Noda, R., Sumiyama, K., Ferrell R. E., and Saitou, N. (2000) Gene diversity of chimpanzee ABO blood group elucidated from intron 6 sequences . Journal of Heredity. 91(3):211-214.

  • Kitano, T. and Saitou, N. (2000) Evolutionary history of the Rh blood group-related genes in vertebrates. Immunogenetics, 51(7) (published in online). Full text in Immunogenetics homepage

  • Miyazaki, S., Hashimoto, H., Shimada, A., Tateno, Y. and Sugawara, H. (2000)A new file format and tools for the large-scale data submission to DNA Data Bank of Japan (DDBJ), Currents in Computational Molecular Biology. 60-61.

  • Miyazaki, S., Mashima, J., Mizunuma, T., Sugawara, H., Tateno, Y., and Gojobori, T. (2000) Large-scale submission of mouse EST data and their handling at the DNA Data Bank of Japan (DDBJ)., "Proceedings of The 14th International Mouse Genome Conference", Tokyo.178.

  • Nakane, S., Shirabe, S., Moriuchi, R., MIzokami, A., Furuya, T., Nishiura, Y., Okazaki, S., Nakamura, N., Suzuki, Y., Nakamura, T., Katamine, S., and Gojobori, T. (2000) Comparative molecular analysis of HTLV-I proviral DNA in HTLV-I infected members of a family with a discordant HTLV-I associated myelopathy in monozygotic twins. Journal of Neuro Virology 6:275-283.

  • Nakamura Y., Gojobori T., and Ikemura T. (2000) Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucl. Acids Res. 28(1): 292.

  • Nakashima, H., and Nishikawa, K. (2000) The genomic DNA sequences of various species are distinctively distributed in nucleotide compostion space. Res. Comm. In Biochem, Cell & Mol. Biol. 4:25-45

  • Noda R., Kitano T., Takenaka O., and Saitou N. (2000) Evolution of the ABO blood group gene in Japanese macaque. Genes and Genetic Systems, 75(3):141-147.

  • Ogura, A., Imanishi, T., Ikeo, K., and Gojobori, T. (2000) Comparative genomics of mouse ESTs with particular reference to evolution of mammalian genomes. Proceedings of The 14th International Mouse Genome Conference, Tokyo.176.

  • Ota, K., Kobayashi, T., Ueno, K., and Gojobori, T. (2000) Evolution of heteromorphic sex chromosomes in the order Aulopiformes. GENE. 259(1-2):25-30.

  • Pineda, D., Gonzalez, J., Callaerts, P., Ikeo, K., Gehring, WJ., and Salo, E. (2000) Searching for the prototypic eye genetic network: Sine oculis is essential for eye regeneration in planarians. Proc Natl Acad Sci USA. 97(9):4525-4529.

  • Saitou N. (2000) Programs for constructing phylogenetic trees and networks of closely related sequences. In Iwatuki.K. (ed.), "IIAS International Symposium on Biodiversity", International Institute for Advanced Studies, Kyoto. 45-50.

  • Seki, M., Higashiyama, Y., Mizokami, A., Kadota, J.-I., Moriuchi, R., Kohno, S., Suziki, Y., Takahashi, K., Gojobori, T., and Katamine, S. (2000) Up-regulation of human T lymphotropic virus type 1 (HTLV-1) tax/rex mRNA in infected lung tissues. Clin Exp Immunol. 120(3):488-498.

  • Shimizu, N., and Gojobori, T. (2000) How can human and simian immunodeficiency viruses utilize chemokine receptors as their coreceptors? GENE. 259(1-2):199-205.

  • Sugawara, H. and Miyazaki, S. (2000) A workbench for the research and development of biological diversity, Currents in Computational Molecular Biology. 58-59.

  • Suzuki, Y.,Yamaguchi-Kabata, Y.,and Gojobori, T. (2000) Nucleotide substitution rates of HIV-1. AIDS Reviews. 2(1):39-47.

  • Tateno Y., Miyazaki S., Ota M., Sugawara H. and Gojobori T. (2000) DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams. Nucleic Acids Res. 28 (1): 24-26.

  • Toyoda, R., Sato, S., Ikeo, K., Gojobori, T., Numakunai, T., Goding, CR., and Yamamoto, H. (2000) Pigment cell-specific expression of the tyrosinase gene in ascidians has a different regulatory mechanism from vertebrates. Gene. 259(1-2):159-170.

  • Wada, Y., Imanishi, T., and Gojobori, T. (2000) Estimating the number of mouse genes and the duplicated regions within the mouse genome. Proceedings of The 14th International Mouse Genome Conference, Tokyo. 24.

  • Wang L., Oota H., Saitou N., Jin F., Matsushita T., and Ueda S. (2000) Genetic structure of a 2500-year-old human population in China and its spatiote mporal changes. Molecular Biology and Evolution, 17(9):1396-1400.

  • Yamaguchi-Kabata, Y., and Gojobori, T. (2000) Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes. J.Virology. 74(9):4335-4350.



日本語による発行物

  • 秋篠宮文仁,秋篠宮紀子,赤木功,秋道智弥,五條堀孝,高田勝,佐々木高明(2000)総合討論「家禽化の諸問題をめぐって」.鶏と人.秋篠宮文仁編.小学館.193-242頁.

  • 今西規,五條堀孝(2000)HLA多型の生成と分子進化.ゲノム多様性と機能解析−MHC多型と疾患感受性.Molecular Medicine.37(5):540-547頁.

  • 太田元規,西川建(2000)プロテオミクスの基礎.綱沢進,平野久編.講談社サイエンティフィク.6.2章 タンパク質高次構造の予測.82-111頁.

  • 川端猛,西川建(2000)タンパク質構造予測コンテスト CASP3.生物物理.40:52-56頁.

  • 五條堀孝(2000)プラナリアに脳の起源をみる.科学.70(4):239-241頁.

  • 五條堀孝(2000)情報生物学の時代に向けて-情報の流れとしての生命と進化.続・ロマンチックな科学者.井川洋二編.羊土社.174-184頁.

  • 五條堀孝(2000)ウイルスの進化.第9回日本組織適合性学会大会シンポジウムII.ウイルス感染とHLA.MHC.7(1) 35頁.

  • 五條堀孝(2000)バイオインフォマティクスの展望と将来.学術月報.53(8) 669:865-870頁.

  • 五條堀孝(2000)散歩道:もう一つのY2K問題-生命情報研究の新世紀に向けて-.学術月報.53(1) 662:93-94頁.

  • 五條堀孝,新村芳人(2000)情報生物学の発展へ向けて.生物物理誌.40(5) 231:318-31頁.

  • 五條堀孝,鈴木善幸(2000)インフルエンザの生態学 3 ウイルスの進化と予測.治療学.34(1):22-26頁.

  • 斎藤成也(2000)類人猿ゲノム −Silver計画.科学 70:231-233頁.

  • 斎藤成也(2000)トピックス:日本進化学会の設立.遺伝 54(2):11-12頁.

  • 斎藤成也,五條堀孝(2000)日本DNAデータバンクの「フィールドワーク」.サイアス.5(2):64-65頁.

  • 新井理,五條堀孝(2000)15 DNA情報解析.医学・薬学研究者のためのバイオテクノロジー概論.木村彰方編.医薬ジャーナル社.307-319頁.

  • 鈴木善幸,五條堀孝(2000)(suggestion) 病原性ウイルスの遺伝子型分類について.治療学.34(9):30-31頁.

  • 舘野義男,菅原秀明,五條堀孝(2000)日本DNAデータバンク(DDBJ)とゲノム医学.現代医療 32:89-96頁.

  • 西川建(2000)ゲノム情報からの立体構造予測.生物物理.40:307-308頁.

  • 西川建(2000)構造ゲノム学と立体構造予測.生物の働きを生み出すタンパク質のかたち頁頁.「大学と科学」組織委員会編頁.クバプロ.43-56頁.

  • 松尾洋,西川建(2000)タンパク質の配列解析と構造予測.廣川有機薬科学実験講座第1巻.廣川書店.92-109頁.
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