DDBJ staff publications (2002)

| 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 |


*Bold are CIB-DDBJ members.

  • Akashi H and Gojobori T. (2002) Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci U S A, 99(6): 3695-3700.
  • Andres AM, Soldevila M, Saitou N, Volpini V, Calafell F, and Bertranpetit J. (2002) Understanding the dynamics of Spinocerebellar Ataxia 8 (SCA8) locus through a comparative genetic approach in humans and apes. Neuroscience Letters. 336: 143-146.
  • Blair JE, Ikeo K, Gojobori T and Hedges SB. (2002) The evolutionary position of nematodes. BMC Evol Biol. 2(1): 7.
  • Callaerts P, Lee PN, Hartmann B, Farfan C, Choy DW, Ikeo K, Fischbach KF, Gehring WJ, de Couet HG. (2002) HOX genes in the sepiolid squid Euprymna scolopes: implications for the evolution of complex body plans. Proc Natl Acad Sci U S A, 99(4): 2088-2093.
  • Cebria F, Kobayashi C, Umesono Y, Nakazawa M, Mineta K, Ikeo K, Gojobori T, Itoh M, Taira M, Alvarado A and Agata K. (2002) FGFR-related gene nou-darake restricts brain tissues to the head region of planarians. Nature, 419: 620-624.
  • Cebria F, Nakazawa M, Mineta K, Ikeo K, Gojobori T and Agata K. (2002) Dissecting planarian central nervous system regeneration by the expression of neural-specific genes. Develop. Dev Growth Differ, 44(2): 135-146.
  • Cebria F, Kudome T, Nakazawa M, Mineta K, Ikeo K, Gojobori T and Agata K. (2002) The expression of neural-specific genes reveals the structural and molecular complexity of the planarian central nervous system. Mech Dev, 116(1-2): 199-204.
  • Elmerot C, Arnason U, Gojobori T and Janke A. (2002) The mitochondrial genome of the pufferfish, Fugu rubripes, and ordinal teleostean relationships. Gene, 295: 163-172.
  • Fantom Consortium (Okazaki Y, Gojobori T, et al.), Riken Genome Exploration Research Group Phase I & II Team, Mouse Genome Sequencing Consortium, Scientific management: Hayashizaki Y. (2002) Analysis of the Mouse Transcriptome based upon Functional Annotation of 60,770 full length cDNAs. Nature 420: 563-573.
  • Fujishima H, Nishimura A, Wachi M, Takagi H, Hirasawa T, Teraoka H, Nishimori K, Kawabata T, Nishikawa K and Nagai K. (2002) kdsA mutations affect FtsZ-ring formation in Escherichia coli K-12. Microbiology, 148: 103-112.
  • Fujiyama A, Watanabe H, Toyoda A, Taylor TD, Itoh T, Tsai S-F, Park H-S, Yaspo M-L Lehrach H, Chen Z, Fu G, Saitou N, Osoegawa K, de Jong PJ, Suto Y. Hattori M, and Sakaki Y. (2002) Construction and Analysis of a Human-Chimpanzee Comparative Clone Map. Science,. 295(5552): 131-134.
  • Fukami-Kobayashi K, Schrieber DR and Benner SA. (2002) Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences. J Mol Biol, 319(3): 729-743.
  • Fumoto M, Miyazaki S and Sugawara H. (2002) Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more. Nucleic Acids Res, 30(1): 66-68.
  • Homma K, Fukuchi S, Kawabata T, Ota M and Nishikawa K. (2002) A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome. Gene, 294: 25-33.
  • Isobe T, Yoshio M, Mizuno K, Lindahl KF, Koide T, Gaudieri S, Gojobori T and Shiroishi T. (2002) Molecular Characterization of the Pb Recoombination Hotspot in the Mouse Major Histocompatibility Complex Class II Region. Genomics, 80: 229-235.
  • Isogai Y, Ota M, Ishii A, Ishida M and Nishikawa K. (2002) Identification of amino acids involved in protein structural uniqueness: Implication for de novo protein design. Prot Engineer, 15: 555-560.
  • Iwama H and Gojobori T. (2002) Identification of Neurotransmitter Receptor Genes under Significantly Relaxed Selective Constraint by Orthologous Gene Comparisons between Humans and Rodents. Mol Biol Evol, 19(11): 1891-1901.
  • Katayama K, Shirato-Horikoshi H, Kojima S, Kageyama T, Oka T, Hoshino FB, Fukushi S, Shinohara M, Uchida K, Suzuki Y, Gojobori T and Takeda N. (2002) Phylogenetic analysis of the complete genome of 18 norwalk-like viruses. Virology, 299: 225-239
  • Kawabata T, Fukuchi S, Homma K, Ota M, Araki J, Ito T, Ichiyoshi N and Nishikawa K. (2002) GTOP: A database of protein structures predicted from genome sequences. Nucl. Acids Res, 30: 294-298.
  • Kunihiro S, Kawanishi Y, Sano M, Naito K, Matsuura Y, Tateno Y, Gojobori T, Yamagata Y, Abe K and Machida M. (2002) A polymerase chain reaction-based method for cloning novel members of a gene family using a combination of degenerate and inhibitory primers. Gene, 289: 177-184.
  • Miyazaki S and Sugawara H. (2002) Networking of Biological Resource Centers: WDCM experiences. Data Science Journal, 1(2): 102-107.
  • Niimura Y and Gojobori T. (2002) In silico chromosome staining: reconstrustion of Giemsa bands from the whole human genome sequence. Proc Natl Acad Sci, 99(2): 797-802.
  • Nishikawa K. (2002) Editorial: Information concept in biology. Bioinformatics, 18: 649-651.
  • Ogawa K, Ishihara S, Saito Y, Mineta K, Nakazawa M, Ikeo K, Gojobori T, Watanabe K and Agata K. (2002) Induction of a noggin-like gene by ectopic DV interaction during planarian regeneration. Dev Biol, 250(1): 59-70.
  • Ogihara Y, Isono K, Kojima T, Endo A, Hanaoka M, Shiina T, Terachi T, Utsugi S, Murata M, Mori N, Takumi S, Ikeo K, Gojobori T, Murai R, Murai K, Matsuoka Y, Ohnishi Y, Tajiri H and TsunewakiK. (2002) Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA. Mol Genet Genomics, 266(5): 740-746.
  • Oota H, Kitano T, Jin ., Yuasa I, Wang L, Ueda S, Saitou N, and Stoneking M. (2002) Extreme mtDNA homogeneity in continental Asian populations. American Journal of Physical Anthropology. 118(2): 146-53.
  • Oota H, Saitou N, and Ueda S. (2002) A large-scale analysis of human mitochondrial DNA sequences with special reference to the population history of East Eurasian. Anthropological Science. 110(3): 293-312.
  • OOta S and Saitou N. (2002). NJML+P: A Hybrid Algorithm of The Maximum Likelihood and Neighbor-Joining Methods Using Parallel Computing. Proceedings of Genome Informatics. 13: 434-435.
  • Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, Kanamori H, Hosokawa S, Masukawa M, Arikawa K, Antonio BA, Gojobori T, et. al. (2002) The genome sequence and structure of rice chromosome 1. Nature 420: 312-316.
  • Sawada H, Kanaya S, Tsuda M, Suzuki F, Azegami K, and Saitou N. (2002) Phylogenomic study of OCTase genes in Pseudomonas syringae pathovars: Horizontal transfer of argK-tox cluster and evolutionary history of OCTase genes on their genomes. Journal of Molecular Evolution. 54: 437-457.
  • Sumiyama K, Saitou N, and Ueda S. (2002) Adaptive evolution of the IgA hinge region in primates. Molecular Biology and Evolution. 19(7): 1093-1099.
  • Tanaka Y, Hanada L, Mizokami M, Yeo A, Shih JW, Gojobori T and Alter HJ. (2002) A Comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades, Proc Natul Acad Sci, 99(24): 15584-15589.
  • Tateno Y, Imanishi T, Miyazaki S, Fukami-Kobayashi K, Saitou N, Sugawara H and Gojobori T. (2002) DNA Data Bank of Japan (DDBJ) for genome scale research in life science. Nucleic Acids Res, 30(1): 27-30.
  • Umetsu K, Iwabuchi N, Yuasa I, Saitou N, Clark PF, Boxshall G, Osawa M, Igarashi K. (2002) Complete mitochondrial DNA sequence of a tadpole shrimp (Triops cancriformis) and analysis of museum samples. Electrophoresis. 23: 4080-4084.
  • Yamaoka Y, Orito E, Mizokami M, Gutierrez O, Saitou N, Kodama T, Osato MS, Kim JG, Ramirez FC, Mahachai V, and Graham DY. (2002) Helicobacter pylori in North and South America before Columbus. FEBS Letter. 517: 180-184.

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