Last updated:2013.6.17.

DDBJ staff publications (2003)

| 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 |


*Bold are CIB-DDBJ members.

  • Ando A, Kawata H, Shigenari A, Anzai T, Ota M, Katsuyama Y, Sada M, Goto R, Takeshima SN, Aida Y, Iwanaga T, Fujimura N,Suzuki Y, Gojobori T, Inoko H. (2003) Genetic polymorphism of the swine major histocompatibility complex (SLA) class I genes, SLA-1, -2 and -3. Immunogenetics. 55(9):583-93.
  • Anzai T, Shiina T, Kimura N, Yanagiya K, Kohara S, Shigenari A, Yamagata T, Kulski JK, Naruse TK, Fujimori Y, Fukuzumi Y, Yamazaki M, Tashiro H, Iwamoto C, Umehara Y, Imanishi T, Meyer A, Ikeo K, Gojobori T, Bahram S, Inoko H. (2003) Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. Proc Natl Acad Sci U S A. 100(13):7708-13.
  • Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31(13):3497-500.
  • Fukami-Kobayashi K, Tateno Y, Nishikawa K. (2003) Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins. Mol Biol Evol. 20(2):267-77.
  • Fukuchi S, Yoshimune K, Wakayama M, Moriguchi M, Nishikawa K. (2003) Unique amino acid composition of proteins in halophilic bacteria. J Mol Biol. 327(2):347-57.
  • Hotta K, Takahashi H, Ueno N, Gojobori T. (2003) A genome-wide survey of the genes for planar polarity signaling or convergent extension-related genes in Ciona intestinalis and phylogenetic comparisons of evolutionary conserved signaling components. Gene. 317(1-2):165-85.
  • Ikeo K, Ishi-i J, Tamura T, Gojobori T, Tateno Y. (2003) CIBEX: center for information biology gene expression database. C R Biol. 326(10-11):1079-82.
  • Ishibashi T, Nakazawa M, Ono H, Satoh N, Gojobori T, Fujiwara S. (2003) Microarray analysis of embryonic retinoic acid target genes in the ascidian Ciona intestinalis. Dev Growth Differ. 45(3):249-59.
  • Kaimori JY, Takenaka M, Nakajima H, Hamano T, Horio M, Sugaya T, Ito T, Hori M, Okubo K, Imai E. (2003) Induction of glia maturation factor-beta in proximal tubular cells leads to vulnerability to oxidative injury through the p38 pathway and changes in antioxidant enzyme activities. J Biol Chem. 278(35):33519-27. Epub 2003 Jun 05.
  • Kashiwagi K, Shiba K, Fukami-Kobayashi K, Noda T, Nishikawa K, Noguchi H. (2003) Characterization of folding pathways of the type-1 and type-2 periplasmic binding proteins MglB and ArgT. J Biochem. 133(3):371-6.
  • Kawasaki S, Kawamoto S, Yokoi N, Connon C, Minesaki Y, Kinoshita S, Okubo K. (2003) Up-regulated gene expression in the conjunctival epithelium of patients with Sjogren's syndrome. Exp Eye Res. 77(1):17-26.
  • Kinjo AR, Takada S. (2003) Competition between protein folding and aggregation with molecular chaperones in crowded solutions: insight from mesoscopic simulations. Biophys J. 85(6):3521-31.
  • Komiyama T, Ikeo K, Gojobori T. (2003) Where is the origin of the Japanese gamecocks? Gene. 317(1-2):195-202.
  • Mineta K, Nakazawa M, Cebria F, Ikeo K, Agata K, Gojobori T. (2003) Origin and evolutionary process of the CNS elucidated by comparative genomics analysis of planarian ESTs. Proc Natl Acad Sci U S A. 100(13):7666-71.
  • Miyazaki S, Sugawara H, Gojobori T, Tateno Y. (2003) DNA Data Bank of Japan (DDBJ) in XML. Nucleic Acids Res. 31(1):13-6.
  • Miyazaki S, Sugawara H, Ikeo K, Gojobori T, Tateno Y. (2003) Free in PMC DDBJ in the stream of various biological data. Nucleic Acids Res. 32 Database issue:D31-4.
  • Miyazaki S, Tateno Y. (2003) DNA Data Bank of Japan as an Indispensable Public Database. In: Populations and Genetics. Knoppers B.M. eds (Martinus Nijhoff Publishers). 115-121.
  • Nakamura K, Suzuki Y, Ikeo K, Ikeda Y, Sato E, Nguyen NT, Gojobori T, Mikami T, Miyazawa T. (2003) Phylogenetic analysis of Vietnamese isolates of feline immunodeficiency virus: genetic diversity of subtype C. Arch Virol. 148(4):783-91.
  • Nakamura Y, Nishio Y, Ikeo K, Gojobori T. (2003) The genome stability in Corynebacterium species due to lack of the recombinational repair system. Gene. 317(1-2):149-55.
  • Nakashima H, Fukuchi S, Nishikawa K. (2003) Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures. J Biochem. 133(4):507-13.
  • Nakazawa M, Cebria F, Mineta K, Ikeo K, Agata K, Gojobori T. (2003) Search for the evolutionary origin of a brain: planarian brain characterized by microarray. Mol Biol Evol. 20(5):784-91.
  • Niimura Y, Terabe M, Gojobori T, Miura K. (2003) Comparative analysis of the base biases at the gene terminal portions in seven eukaryote genomes. Nucleic Acids Res. 31(17):5195-201.
  • Nishio Y, Nakamura Y, Kawarabayasi Y, Usuda Y, Kimura E, Sugimoto S, Matsui K, Yamagishi A, Kikuchi H, Ikeo K, Gojobori T. (2003) Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens. Genome Res. 13(7):1572-9.
  • Ogasawara O, Kawamoto S, Okubo K. (2003) Zipf's law and human transcriptomes: an explanation with an evolutionary model. C R Biol. 326(10-11):1097-101.
  • Ohshima K, Hattori M, Yada T, Gojobori T, Sakaki Y, Okada N. (2003) Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates. Genome Biol. 4(11):R74.
  • Ota K, Tateno Y, Gojobori T. (2003) Highly differentiated and conserved sex chromosome in fish species (Aulopus japonicus: Teleostei, Aulopidae). Gene. 317(1-2):187-93.
  • Ota M, Kinoshita K, Nishikawa K. (2003) Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation. J Mol Biol. 327(5):1053-64.
  • Pignatelli S, Dal Monte P, Rossini G, Chou S, Gojobori T, Hanada K, Guo JJ, Rawlinson W, Britt W, Mach M, Landini MP. (2003) Human cytomegalovirus glycoprotein N (gpUL73-gN) genomic variants: identification of a novel subgroup, geographical distribution and evidence of positive selective pressure. J Gen Virol. 84(Pt 3):647-55.
  • Shigemoto Y, Ymaguchi M, Miyzazaki S, Sugawara, H. (2003) Enhancement of the SOAP Server in DDBJ Web Services to Process Tsunami of Biological Data. Genome Informatics 14: 669-70.
  • Sugawara H, Gojobori T, Konno T, Shigemoto Y, Ymaguchi M. (2003) A Prototype of PubMed Central Japan. Genome Informatics 14: 671-2.
  • Sugawara H, Miyazaki S. (2003) AHMII: Agent to Help Microbial Information Integration. Nucleic Acids Res. 31(13):3727-8.
  • Sugawara H, Nakamura Y, Ikeo K, Miyazaki S, Gojobori T, Satou K, Konagaya A. (2003) Analysis of Horizontal Gene Transfer and Clustering of Microbial ORFs by Use of a GRID Environment. Genome Informatics 14: 567-8.
  • Suzuki Y, Gojobori T. (2003) Analysis of coding sequences. In The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny. Salemi M, Vandamme A.-M. eds. (Cambridge University Press). 283-303.
  • Wakimoto K, Chiba H, Michibata H, Seishima M, Kawasaki S, Okubo K, Mitsui H, Torii H, Imai Y. (2003) A novel diacylglycerol acyltransferase (DGAT2) is decreased in human psoriatic skin and increased in diabetic mice. Biochem Biophys Res Commun. 310(2):296-302.
  • Yajima I, Endo K, Sato S, Toyoda R, Wada H, Shibahara S, Numakunai T, Ikeo K, Gojobori T, Goding CR, Yamamoto H. (2003) Cloning and functional analysis of ascidian Mitf in vivo: insights into the origin of vertebrate pigment cells. Mech Dev. 120(12):1489-504.

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