Last updated:2011.8.4.

DDBJ staff publications (2005)

| 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 |


*Bold are CIB-DDBJ members.

  • Chiusano ML, Gojobori T, Toraldo G. A C++ computational environment for biomolecular sequence management. Computational Management Sciences. 2005 2(3): 165-80.

  • Fujii Y, Itoh T, Sakate R, Koyanagi KO, Matsuya A, Habara T, Yamaguchi K, Kaneko Y, Gojobori T, Imanishi T. A web tool for comparative genomics: G-compass. Gene. 2005 Dec 30;364C:45-52.

  • Fukami-Kobayashi K, Shiina T, Anzai T, Sano K, Yamazaki M, Inoko H, Tateno Y. Genomic evolution of MHC class I region in primates. Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9230-4.

  • Hanada K, Suzuki Y, Nakane T, Hirose O, Gojobori T. The origin and evolution of porcine reproductive and respiratory syndrome viruses. Mol Biol Evol. 2005 Apr;22(4):1024-31.

  • Hayashi H, Abe T, Sakamoto M, Ohara H, Ikemura T, Sakka K, Benno Y. Direct cloning of genes encoding novel xylanases from the human gut. Can J Microbiol. 2005 Mar;51(3):251-9.

  • International Rice Genome Sequencing Project. The map-based sequence of the rice genome. Nature. 2005 Aug 11;436:793-800

  • Itoh K, Kawasaki S, Kawamoto S, Seishima M, Chiba H, Michibata H, Wakimoto K, Imai Y, Minesaki Y, Otsuji M, Okubo K. Identification of differentially expressed genes in psoriasis using expression profiling approaches. Exp Dermatol. 2005 Sep;14(9):667-74.

  • Kaimori JY, Takenaka M, Okubo K. Quantification of gene expression in mouse and human renal proximal tubules. Methods Mol Biol. 2005;293:209-19.

  • Kijimoto T, Watanabe M, Fujimura K, Nakazawa M, Murakami Y, Kuratani S, Kohara Y, Gojobori T, Okada N. cimp1, a novel astacin family metalloproteinase gene from East African cichlids, is differentially expressed between species during growth. Mol Biol Evol. 2005 Aug;22(8):1649-60

  • Kinjo AR, Horimoto K, Nishikawa K. Predicting absolute contact numbers of native protein structure from amino acid sequence. Proteins. 2005 Jan 1;58(1):158-65.

  • Kinjo AR, Nishikawa K. Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structure from amino acid sequence using critical random networks. BIOPHYSICS. 2005, 1:67-74.

  • Kinjo AR, Nishikawa K. Recoverable one-dimensional encoding of three-dimensional protein structures. Bioinformatics. 2005 May 15;21(10):2167-70.

  • Koyanagi KO, Hagiwara M, Itoh T, Gojobori T, Imanishi T. Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system. Gene. 2005 Jul 4;353(2):169-76.

  • Matsumura Y, Shimokawa K, Hayashizaki Y, Ikeo K, Tateno Y, Kawai J. Development of a spot reliability evaluation score for DNA microarrays. Gene. 2005 May 9;350(2):149-60.

  • Minezaki Y, Homma K, Nishikawa K. Genome-Wide Survey of Transcription Factors in Prokaryotes Reveals Many Bacteria-Specific Families Not Found in Archaea. DNA Res. 2005,12(5): 269-80.

  • Nakao M, Barrero RA, Mukai Y, Motono C, Suwa M, Nakai K. Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals. Nucleic Acids Res. 2005 Apr 28;33(8):2355-63.

  • Nishio Y, Usuda Y, Gojobori T, Ikeo K. Comparative whole genome sequence analysis of corynebacteria. Bioinformatics of Genome Regulation and Structure II. 2005 121-9.

  • Ogasawara M, Imanishi T, Moriwaki K, Gaudieri S, Tsuda H, Hashimoto H, Shiroishi T, Gojobori T, Koide T. Length variation of CAG/CAA triplet repeats in 50 genes among 16 inbred mouse strains. Gene. 2005 Apr 11;349:107-19.

  • Ogura A, Ikeo K, Gojobori T. Estimation of ancestral gene set of bilaterian animals and its implication to dynamic change of gene content in bilaterian evolution. Gene. 2005 Jan 17;345(1):65-71.

  • Osada N, Hirata M, Tanuma R, Kusuda J, Hida M, Suzuki Y, Sugano S, Gojobori T, Shen CK, Wu CI, Hashimoto K. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Mol Biol Evol. 2005 Oct;22(10):1976-82.

  • Saka K, Tadenuma M, Nakade S, Tanaka N, Sugawara H, Nishikawa K, Ichiyoshi N, Kitagawa M, Mori H, Ogasawara N, Nishimura A. A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies. DNA Res. 2005 Feb 28;12(1):63-8.

  • Shirai T, Nakato A, Izutani N, Nagahisa K, Shioya S, Kimura E, Kawarabayasi Y, Yamagishi A, Gojobori T, Shimizu H. Comparative study of flux redistribution of metabolic pathway in glutamate production by two coryneform bacteria. Metab Eng. 2005 Mar;7(2):59-69.

  • Tamiya G, Shinya M, Imanishi T, Ikuta T, Makino S, Okamoto K, Furugaki K, Matsumoto T, Mano S, Ando S, Nozaki Y, Yukawa W, Nakashige R, Yamaguchi D, Ishibashi H, Yonekura M, Nakami Y, Takayama S, Endo T, Saruwatari T, Yagura M, Yoshikawa Y, Fujimoto K, Oka A, Chiku S, Linsen SE, Giphart MJ, Kulski JK, Fukazawa T, Hashimoto H, Kimura M, Hoshina Y, Suzuki Y, Hotta T, Mochida J, Minezaki T, Komai K, Shiozawa S, Taniguchi A, Yamanaka H, Kamatani N, Gojobori T, Bahram S, Inoko H. Whole genome association study of rheumatoid arthritis using 27 039 microsatellites. Hum Mol Genet. 2005 Aug 15;14(16):2305-21.

  • Tanaka T, Tateno Y, Gojobori T. Evolution of vitamin B6 (pyridoxine) metabolism by gain and loss of genes. Mol Biol Evol. 2005 Feb;22(2):243-50.

  • Tanaka Y, Hanada K, Orito E, Akahane Y, Chayama K, Yoshizawa H, Sata M, Ohta N, Miyakawa Y, Gojobori T, Mizokami M. Molecular evolutionary analyses implicate injection treatment for schistosomiasis in the initial hepatitis C epidemics in Japan. J Hepatol. 2005 Jan;42(1):47-53.

  • Tanino M, Debily MA, Tamura T, Hishiki T, Ogasawara O, Murakawa K, Kawamoto S, Itoh K, Watanabe S, de Souza SJ, Imbeaud S, Graudens E, Eveno E, Hilton P, Sudo Y, Kelso J, Ikeo K, Imanishi T, Gojobori T, Auffray C, Hide W, Okubo K. The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D567-72.

  • Tateno Y, Saitou N, Okubo K, Sugawara H, Gojobori T. DDBJ in collaboration with mass-sequencing teams on annotation. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D25-8.

  • The FANTOM Consortium: Carninci P, Gojobori T and other 158 authors and Hume D.A. and Riken Genome Exploration Research Group and Genome Science Group. (Genome Network Project Core Group):Kai C., and other 31 authors and Hayashizaki Y. (2005). The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63.

  • Uchiyama T, Abe T, Ikemura T, Watanabe K. Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes. Nat Biotechnol. 2005 Jan;23(1):88-93.

  • Yamasaki C, Koyanagi KO, Fujii Y, Itoh T, Barrero R, Tamura T, Yamaguchi-Kabata Y, Tanino M, Takeda J, Fukuchi S, Miyazaki S, Nomura N, Sugano S, Imanishi T, Gojobori T. Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB). Gene. 2005 Dec 30;364:99-107.

  • Yokomine T, Shirohzu H, Purbowasito W, Toyoda A, Iwama H, Ikeo K, Hori T, Mizuno S, Tsudzuki M, Matsuda Y, Hattori M, Sakaki Y, Sasaki H. Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region. Genome Res. 2005 Jan;15(1):154-65.

* Some of the publications in Japanese are excluded.

ページの先頭へ戻る