DDBJ スタッフの発行物(2007年)

| 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 |


*太字が DDBJ スタッフです

  • Dobashi Y, Suzuki S, Sugawara H, Ooi A (2007) Involvement of epidermal growth factor receptor and downstream molecules in bone and soft tissue tumors. Hum Pathol. June;38(6):914-25.

  • Field D, Garrity G, Gray T, Selengut J, Sterk P, Thomson N, Tatusova T, Cochrane G, Kottmann R, Lister A. L, Tateno Y, and Vaughan R (2007) eGenomics: Cataloguing our complete genome collection III, Comp and Func Genomics ID 47304

  • Fukami-Kobayashi K, Minezaki Y, Tateno Y and Nishikawa K (2007) A tree of life based on protein domain organizations Mol Biol Evol. 24: 1181 - 1189

  • Gough C, Gojobori T and Imanishi T (2007) Cancer-related Mutations in BRCA1-BRCT Cause Long-Range Structural Changes in Protein-Protein Binding Sites: A Molecular Dynamics Study. Proteins 66(1), 69-86.

  • Hanada K, Tanaka Y, Mizokami M, Gojobori T and Alter H J (2007). A reduction in selective immune pressure during the course of chronic hepatitis C correlates with diminished biochemical evidence of hepatic inflammation. Virology 361, 27-33.

  • Homma K, Fukuchi S, Nakamura Y, Gojobori T and Nishikawa K (2007). Gene cluster analysis method identifies horizontally transferred genes with high reliability and indicates that they provide the main mechanism of operon gain in eight species of {gamma}-Proteobacteria. Mol. Biol. Evol. 24(3), 805-813.

  • Honda H, Kataoka F, Nagaoka S, Kawai Y, Kitazawa K, Kimura N, Taketomo N, Yamazaki Y, Tateno Y and Saito T (2007) β-galactosidase, phospho-β-galactosidase and phospho-β- glucosidase activities of lactobacilli strains isolated from human faces, Lett Appl Microbiol. 45: 461-466

  • Hoshino H, Uchida T, Otsuki T, Kawamoto S, Okubo K, Takeichi M, and Chisaka O (2007) Cornichon-like Protein Facilitates Secretion of HB-EGF and Regulates Proper Development of Cranial Nerves. Molecular Biology of the Cell. Apr Vol.18 D1143-1152

  • Hotta K, Mitsuhara K, Takahashi H., Inaba K, Oka K, Gojobori T and Ikeo K (2007). A web-based interactive developmental table for the ascidian Ciona intestinalis, including 3D real-image embryo reconstructions: I. From fertilized egg to hatching larva. Dev. Dyn. 236(7), 1790-1805.

  • The Rice Annotation Project: Ito, T, Ikeo K, Gojobori T et al. (2007). Curated Genome Annotation of Oryza sativa ssp. Japonica and Comparative Genome Analysis with Arabidopsis thaliana. Genome Res. 17(2), 175-183.

  • Jung Shan H, Ohyanagi H, Hayakawa S, Osato N, Nishimiya-Fujisawa C, Ikeo K, David C, Fujisawa T and Gojobori T (2007). The evolutionary emergence of cell type specific genes inferred from the gene expression analysis of hydra. Proc. Natl. Acad. Sci. USA 104(37), 14735-14740.

  • Kotegawa H, Hidaka H, Kobayashi TC, Kikuchi D, Sugawara H, Sato H (2007) Connection between Charge Fluctuations and the Coherent Temperature in the Heavy-Fermion System SmOs4Sb12: A ;{121, 123}Sb NQR Study.Phys Rev Lett. Oct 12;99(15):156408.

  • Kubota R, Hanada K, Furukawa Y, Arimura K, Osame M, Gojobori T and Izumo S (2007) Genetic Stability of Human T Lymphotropic Virus Type I despite Antiviral Pressures by CTLs.. Journal of Immunol. 178(9), 5966-5972.

  • Landry CR, Castillo-Davis CI, Ogura A, Liu JS, and Hartl DL (2007) Systems-level analysis and evolution of the phototransduction network in Drosophila. PNAS 104,9, 3283-3288

  • Liu QX, Nakashima-Kamimura N, Ikeo K, Hirose S, and Gojobori T (2007). Compensatory Change of Interacting Amino Acids in the Coevolution of Transcriptional Coactivator MBF1 and TATA-Box Binding Protein TBP. Mol. Biol. Evol. 24(7), 1458-1463.

  • Makino T and Gojobori T (2007). Evolution of Protein-Protein Interaction Network. Gene and Protein Evolution. Ge-nome Dynamics Vol. 3, 13-29.

  • Hirahata M, Abe T, Tanaka N, Kuwana Y, Shigemoto Y, Miyazaki S, Suzuki Y, Sugawara H (2007) Genome Infor-mation Broker for Viruses (GIB-V): database for comparative analysis of virus genomes. Nucleic Acids Research 35:D339-D342.

  • Osato N, Suzuki Y, Ikeo K, and Gojobori T (2007). Transcriptional interferences in cis natural antisense transcripts of human and mouse. Genetics 176, 1299-1306.

  • Sakai H, Koyanagi KO, Imanishi T, Itoh T, and Gojobori T (2007). Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes. GENE 389(2), 196-203.

  • Sakamoto A, Iwabata K, Koshiyama A, Sugawara H, Yanai T, Kanak Y, Takeuchi R, Daikuhara Y, Takakusagi Y, Sakaguchi K (2007) Two X family DNA polymerases, lambda and mu, in meiotic tissues of the basidiomycete, Coprinus cinereus. Chromosoma. Dec;116(6):545-56.

  • Sakate R, Suto Y, Imanishi T, Tanoue T, Hida M, Hayasaka I, Kusuda J, Gojobori T, Hashimoto K and Hirai M (2007) Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the tran-scriptome.GENE 399(1), 1-10.

  • Semba H, Sugawara H, Otsuka M, Ueki A (2007) [Nocturnal epilepsy associated with sleep apnea syndrome] Nippon Naika Gakkai Zasshi. Apr 10;96(4):784-6.

  • Shin-I T, Tanaka Y, Tateno Y and Mizokami M (2007) Development and public release of comprehensive Hepatitis virus database, Hepatol Res. Sep 17.

  • Shiono Y, Sugawara H, Nazarova M, Murayama T, Takahashi K, Ikeda M (2007) Three lanostane triterpenoids, aeruginosols A, B and C, from the fruiting bodies of Stropharia aeruginosa.J Asian Nat Prod Res. Sep;9(6):531-5.

  • Sugawara H, Abe T, Gojobori T, and Tateno Y (2007) DDBJ working on evaluation and classification of bacterial genes in INSDC. Nucleic Acids Res. 35: D13-D15

  • Sugawara H, Iwata H, Souri M, Ichinose A (2007) Regulation of human protein Z gene expression by liver-enriched transcription factor HNF-4alpha and ubiquitous factor Sp1.J Thromb Haemost. Nov;5(11):2250-8.

  • Sugawara H, Ogasawara O, Okubo K, Gojobori T and Tateno Y (2007) DDBJ with new system and face. Nucleic Acids Res Oct 25

  • Suzuki Y (2007) Multiple transmissions of tick-borne encephalitis virus between Japan and Russia. Genes & Genetic Systems 82:187-195.

  • Suzuki Y (2007) Inferring natural selection operating on conservative and radical substitution at single amino acid sites. Genes & Genetic Systems 82:341-360.

  • Takeda JI, Suzuki Y, Nakao M, Kuroda T, Sugano S, Gojobori T and Imanishi T (2007). H-DBAS: Alternative Splic-ing Database of Completely Sequenced and Manually Annotated Full-length cDNAs Based on H-Invitational. Nu-cleic Acids Res. 35 (Database issue), D104-109

  • Tanaka N, Uchino M, Miyazaki S, Sugawara H (2007) Identification of discriminative characteristics for clusters from biologic data with InforBIO software.BMC Bioinformatics. Aug 2;8:281.

  • Tanaka Y, Hanada K, Hanabusa H, Kurbanov F, Gojobori T and Mizokami M (2007). Increasing genetic diversity of hepatitis C virus in hemophiliacs with human immunodeficiency virus coinfection. J. Gen. Virol. 88(Pt 9), 2513-2519.

  • Ushiyama M, Ikeda R, Sugawara H, Yoshida M, Mori K, Kangawa K, Inoue K, Yamada K, Miyata A (2007) Differen-tial intracellular signaling through PAC1 isoforms as a result of alternative splicing in the first extracellular domain and the third intracellular loop. Mol Pharmacol. Jul;72(1):103-11.

  • Wang HY, Chien HC, Osada N, Hashimoto K, Sugano S, Gojobori T, Chou CK, Tsai SF, Wu CI, and Shen CK (2007). Rate of Evolution in Brain-Expressed Genes in Humans and Other Primates. PLoS Biology 5(2), e13.

  • Yamasaki A, Imada S, Higashimichi H, Fujiwara H, Saita T, Miyamachi T, Sekiyama A, Sugawara H, Kikuchi D, Sato H, Higashiya A, Yabashi M, Tamasaku K, Miwa D, Ishikawa T, Suga S (2007) Coexistence of strongly mixed-valence and heavy-fermion character in SmOs4Sb12 studied by soft- and hard-X-ray spectroscopy. Phys Rev Lett. Apr 13;98(15):156402.

  • Genome Information Integration Project And H-Invitational 2, Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Taka-bayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A,
    Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halli-gan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M,
    Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang Q, Go M, Minoshima S, Ohtsubo M, Hanada K, Tonellato P, Isogai T, Zhang J, Lenhard B, Kim S, Chen Z, Hinz U, Estreicher A, Nakai K, Makalowska I, Hide W, Tiffin N, Wilming L, Chakraborty R, Soares MB, Chiusano ML, Suzuki Y, Auffray C, Yamaguchi-Kabata Y, Itoh T, Hishiki T, Fukuchi S, Nishikawa K, Sugano S, Nomura N, Tateno Y, Imanishi T, Gojobori T (2008) The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res. Jan;36(Database issue):D793-9.

  • You DJ, Fukuchi S, Nishikawa K, Koga Y, Takano K, Kanaya S (2007) Protein thermostabilization requires a fine-tuned placement of surface-charged residues. J Biochem. Oct;142(4):507-16.

  • Yuge K, Ikeo K and Gojobori T (2007) Evolutionary origin of sex-related genes in the mouse brain. Gene 406(1-2), 108-112.
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