DDBJ Release Data
DDBJ prepares and diffuses a snapshot of the International Nucleotide Sequence Databases of DDBJ/EMBL/GenBank four times a year.
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DDBJ Release in the flat file format
- Nucleotide sequence database, latest DDBJ quarterly released data
- DDBJ new data in flat file format
- Daily update after the last release
- DDBJ Release Notes
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DAD Release
- Amino acids database, latest quarterly released data
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New DAD data (daily update)
- Daily update after the last release
- DAD Release Notes
- 16S rRNA (Prokaryotes) in FASTA format
- sequence data extracted from the latest DDBJ periodical release
- TPA
- TPA data
Data other than DDBJ Release
DDBJ Release does NOT include the data in WGS and MGA.
- WGS data
- Whole Genome Shotgun data
- MGA data
- Mass sequences for Genome Annotation data
DRA and DTA data
- DDBJ Read Archive
- DDBJ Read Archive is a repository for sequencing data from next-generation sequencing platforms.
- DDBJ Trace Archive
- DDBJ Trace Archive is a permanent repository of DNA sequence chromatograms (traces), base calls, and quality estimates for single-pass reads from various large-scale sequencing projects.
*DDBJ starts providing Trace Archive data by FTP
Mirrored Databases
- Please refer :
Use policies of softwares and data provided through DDBJ
Web browser is an interface for human to query, analyze and browse the data. Web API (Web Application Program Interface) is an interface for computer programs to process the data. You can let the server at the remote site work by the program that you implemented in your computer.
You can manipulate the data in the latest version of the large scale database without a fuss of downloading. Furthermore, you can efficiently develop a highly functional workflow by interconnecting multiple Web API services.
- SOAP Web API
- SOAP stands for Simple Object Access Protocol. DDBJ Web API services are connectable through the DDBJ SOAP server. The output is well structured in XML.
- REST Web API
- REST stands for Representational State Transfer. REST is a simpler protocol than SOAP and suitable for the transfer large files.
- Web API tutorial
- Guidance for the user of SOAP, REST and actual DDBJ Web APIs
- Web API search
- Keyword search system against various documents such as the usage of Web APIs and introduction pages of workflow which is composed of Web APIs.
- Workflows composed of SOAP Web APIs
- How many windows do you open in your computer to complete a workflow? You can write a program that combines multiple Web APIs even from distributed sites to establish a workflow. Then you may enjoy coffee or tea, or concentrate in a new theory while the workflow silently carries out the task.
