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Contact Us
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Copyright © 1995-2006
DDBJ All rights reserved. |
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-> Links to DDBJ web pages on Information Biology
-> Links to NIG web pages on Information Biology
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General Databases Developed inside Japan
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SHIGEN
[Genetic Informatics Lab, NIG]
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GenomeNet[Bioinformatics Center, Inst for Chemical Research, Kyoto Univ]
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KEGG (Kyoto Encyclopedia of Genes and
Genomes) [Bioinformatics Center, Inst for Chemical Research, Kyoto Univ]
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PDBj (Protein Data Bank
Japan)
［Inst for Protein Research, Osaka Univ］
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HGC [Human Genome Center, Inst of Medical Science
of the Univ of Tokyo]
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NIAS DNA Bank [National Inst of Agrobi
ological Resources]
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RIKEN BRC [RIKEN BioResource Center]
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General Databases Developed outside Japan
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NCBI/GenBank (nucleotide sequences and others)
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EBI/EMBL (nucleotide sequences and others)
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UniProt
(proteins and others)
data available from DDBJ anonymous ftp download site
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TrEMBL (amino acid
sequences and others)
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SWISS-PROT (amino acid sequences and others)
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PIR (Protein Information
Resource) (amino acid sequences and others)
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PDB (Protein Data Bank) (three-dimensional structures of proteins)
->Please visit PDBj (Protein Data Bank Japan)
data available from DDBJ anonymous ftp download site
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Ensembl (nucleotide sequences and others)
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Large-Scale Genome Sequencing Centers
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RIKEN Genomic Sciences
Center [Japan]
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KAZUSA DNA RESEARCH INST [Japan]
data available from DDBJ anonymous ftp download site
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Sanger Centre [Wellcome Trust, UK]
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J. Craig Venter Institute [USA] (change from TIGR)
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Univ of Washington
Genome Center [USA]
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Genome Sequencing Center
[Washington Univ School of Medicine, USA]
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Broad Institute
[ Whitehead, MIT, and Harvard, USA]
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GOBASE [The Organella Genome Database, Canada]
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Celera Genomics Corporation [USA]
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Incyte Corporation [USA]
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Taxonomy and Nomeclature Databases
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TXSearch (Retrieval of
Unified taxonomy database) [CIB/DDBJ, NIG, Japan]
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NCBI
Taxonomy Homepage [NCBI, USA]
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Tree of Life
Project [Dr. David R. Maddison at Univ of Arizona, USA]
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TreeBASE (Mirror Site) [Univ at
Buffalo, USA]
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Nomenclature Database [Dr. Kitakami Hajime at Hiroshima City Univ, Japan]
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Biology and Biochemistry related Databases
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IUBMB (International
Union of Biochemistry and Molecular
Biology) [Univ of London,UK]
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IUPAC (International Union of Pure
and Applied Chemistry) [Univ of London,UK]
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RAMBIOS [RAMBIOS Publish
ing Association in Japan]
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Lsd (Life Science Dictionary
) Project [Lab of Molecular Genetics, NIG and others, Japan]
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- Mammals
- Human
- Mouse・Rat
- Other Mammals
- Other
Vertebrates
- Invertebrates
- Drosophila (fruit fly)
- Nematode
- Other Invertebrates
- Fungi
- Yeast
- Other Fungi
- Plants
- Rice
- Thale cress
- Other Plants
- Other
Eukaryotes
- Microorganisms (WDCM)
- Prokaryotes
- Viruses
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Databases for Specific Gene Groups
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RDP (Ribosomal Database Project II)
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REBASE (The Restriction Enzyme Database) [Dr. Richard J. Roberts, New England BioLabs, USA]
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EPD (Eukaryotic Promoter Database)
[Swiss Inst for Experimental Cancer Research, Swiss]
data available from DDBJ anonymous ftp download site
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Codon Usage Database
[The First Lab for Plant Gene Research, Kazusa DNA Research Inst, Japan]
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SPAD (Signaling
Pathway Database) [Lab of Molecular Gene Technics, Kyushu Univ, Japan]
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Aberrant
Splicing Database [Dr. Kenta Nakai at Human Genome Center, Univ of Tokyo, Japan]
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IMGT (the international ImMunoGeneTics
information system) [Montpellier II Univ, France]
data available from DDBJ anonymous ftp download site
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Gene Expression Databases & Related Webpages
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Gene Expression Databases and Related Webpages
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Databases for SNP and related Webpages
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human
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others
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domain and motif
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three-dimensional structure
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structure comparison
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others
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Nucl. Acids. Res. 2007 Vol.35, Database issue
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Nucl. Acids. Res. 2006 Vol.34, Database issue
[Back to Doors for Information Biology]
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