News for the NIG super computer system replacement in Mar., 2012

MiGAP (Microbial Genome Annotation Pipeline) is a mechanical annotation tool which provides novice and old pro alike to microbial contigs and genomes.
The service was resumed on May 1, 2012 , from DDBJ website.
http://migap.ddbj.nig.ac.jp

To use the service, users needs an account to login the MiGap site.
Please get an account from Apply the use of Web service of Apply the use of super computer system (in Japanese).

Manual:
How to Use MiGAP  (in Japanese)

Note: At present, only new annotation is available (View of old results which had been annotated before Feb. 2012 is in preparation).
The National Institute of Genetics replaced its computer system in this March 2012. And most of DDBJ services which had been suspended because of the replacement works since February 15, was completed resumption or renewal. DDBJ apologizes for your inconveniences during this period, and hopes the renewd services are more useful for the users,
Current operational status is as follows.


Services in operation
 DDBJ HP
HP view by WWW (news/notices, etc are updated appropriately)
 Data submission, update, and release
Mass data submission (other than massFTP)
Issue of Accession Nos.
Data update, and data release
 DRA, DTA, Bioproject data submission, update, release and data retrieval
 Entry search/Keyword search
 Homology search/Phylogenetics
 Another data retrieval and analyses
 NIG new supercomputersystem
 
Under suspension (resume will be notified at DDBJ HP)
 Data retrieval and analyses
DDBJ Read Annotation Pipeline
Web API
GIB · GIB-V
 Data submission
Mass submission via massFTP
 CIBEX data submission, update, release and data retrieval
 
 
(Notes)
 
We are pleased to inform you that we recommence ClustalW.

We are sorry for your inconvenience.
Please use it.

Reference : News for computer system replace in Mar., 2012 (title list)
We are pleased to inform you that we recommence BLAST.

We are sorry for your inconvenience.
Please use it.

Reference : News for computer system replace in Mar., 2012 (title list)
The computer system in the National Institute of Genetics will be replaced with an upgraded one by March, 2012. Consequently, DDBJ fulfills the provision of high-speed search and/or analysis systems, data submission systems corresponding for the explosive data increase, and other new services.

According to this replacement, currently, some DDBJ services are being suspended as of February 15, 2012.
The services that are available from April 2.
 Search and Analysis
 
NIG starts the application for new supercomputer system
 NIG new supercomputer system
We start the operation this system from March 21, 2012.
For using, you need to apply for a supercomputer account from "Apply the use of super computer system (in Japanese)".
For more information, please refer to the "New supercomputer introduction (in Japanese)" and "How to use the super computer system (in Japanese)".
 
Under suspention (resume will be notified at DDBJ HP)
 Data retrieval and analyses
BLAST & ClustalW
Resume is scheduled for the middle of March, after running the new supercomputer system. Before the services are resumed, as alternative way, please visit NCBI BLAST, EBI-ClustalWGenomenet-ClustalW(Kyoto Univ.)
DDBJ Read Annotation Pipeline
Web API
GIB · GIB-V
GTOP
PMD
 Data submission
Mass submission via massFTP
 
Continuously provided services
 DDBJ HP
DDBJ HP view by WWW
DDBJ HP update (news, notices, etc)
 Data submission, update, and release
SAKURA data submission
Mass data submission (other than massFTP)
Issue of Accession Nos.
Data update,and data release
 DRA/DTA/Bioproject data submission, update,release and data retrieval
 CIBEX data submission, update,release and data retrieval
 Data retrieval and analyses
GTPS
 Data download by anonymousFTP
 
Currently provided as new services (from Feb.15)
 
 
DDBJ sincerely apologizes for your inconvenience. Thank you very much for your understanding and cooperation.
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