Last updated:2015.6.1.

Search using WABI BLAST

BLAST search job

A BLAST search job is first registered in the queue of jobs awaiting execution. The job is then executed as soon as computing resources become free.
See Also: Search job status

Search Job Status

WABI search jobs transition through the following status.

Job Status Explanation
waiting The job has been added to the queue, but has not yet commenced execution.
running The job is being executed.
finished The job has completed execution.
not-found The job with the specified Request ID does not exist.
Example response values when querying job status:
1request-ID: wabi_blast_1111-1111-1111-11-111-111111
2status: finished
3current-time: 2013-01-01 12:34:56
4system-info:
5stdout

1{ 2 "request-ID": "wabi_blast_1111-1111-1111-11-111-111111", 3 "status": "finished", 4 "current-time": "2013-01-01 12:34:56", 5 "system-info": "\nstdout" 6}
1<?xml version="1.0" ?> 2<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> 3<result> 4 <request-ID>wabi_blast_1111-1111-1111-11-111-111111</request-ID> 5 <status>finished</status> 6 <current-time>2013-01-01 12:34:56</current-time> 7 <system-info>stdout</system-info> 8</result>
 1{
 2        "error-message": "Unexpected error (status == null)",
 3        "requestId": "wabi_blast_1111-1111-1111-11-111-111111",
 4        "jobId": "123456",
 5        "month": "01",
 6        "day": "01",
 7        "hour": "12",
 8        "min": "34",
 9        "sec": "56",
10        "millisec": "789",
11        "randomId": "987654" 
12}

        

BLAST search criteria

Example of parameters that are passed on when a BLAST job is submitted using WABI.

Example:
 1{
 2        "address": "",
 3        "database": "hum",
 4        "datasets": "ddbjall",
 5        "format": "json",
 6        "parameters": " -v 100 -b 100 -e 10 -F F -W 11",
 7        "program": "blastn",
 8        "querySequence": ">my query sequence 1\nCACCCTCTCTTCACTGGAAAGGACACCATGAGCACGGAAAGCATGATCCAGGACGTGGAA\nGCTGGCCGAGGAGGCGCTCCCCAGGAAGACAGCAGGGCCCCAGGGCTCCAGGCGGTGCTG\nGTTCCTCAGCCTCTTCTCCTTCCTGCTCGTGGCAGGCGCCGCCAC\n",
 9        "result": "www" 
10}

        

BLAST search result

The following is an example of the BLAST search output. This is the same as the file generated using the blastall command, when executed using the "-o" command line option.

Example:
 1BLASTN 2.2.25 [Feb-01-2011]
 2
 3Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
 4Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
 5"Gapped BLAST and PSI-BLAST: a new generation of protein database search
 6programs",  Nucleic Acids Res. 25:3389-3402.
 7
 8Query= AB000095|AB000095.1 Homo sapiens mRNA for hepatocyte growth
 9factor activator inhibitor, complete cds.
10         (1740 letters)
11
12Database: hum
13           572,091 sequences; 5,019,832,159 total letters
14
15Searching..................................................done
16
17                                                                 Score    E
18Sequences producing significant alignments:                      (bits) Value
19
20AB000095|AB000095.1 Homo sapiens mRNA for hepatocyte growth fact...  3449   0.0
21BC018702|BC018702.1 Homo sapiens serine peptidase inhibitor, Kun...  3435   0.0
22BC004140|BC004140.1 Homo sapiens serine peptidase inhibitor, Kun...  3190   0.0
23BT007425|BT007425.1 Homo sapiens serine protease inhibitor, Kuni...  3053   0.0
24AY358969|AY358969.1 Homo sapiens clone DNA35880 HAI-1 (UNQ223) m...  2145   0.0
25AY296715|AY296715.1 Homo sapiens hepatocyte growth factor activa...  1984   0.0
(後略)
        

BLAST search result image

BLAST search jobs submitted using WABI generate a graphical display of the search output.

Example:
wabi_blast_imagedata
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