7.Annotation – link to the pages that explain error/warning

  • If there are is no error after you click "confirm", "Next" button is changed to be clickable and you can move to the next process.
  • Error/warning messages are displayed beneath annotation input area when error or warning occurred.
  • In order to correct error, please scroll-up the screen, and edit entry at which error occurred on annotation input field. Please click "Confirm" after you correct the errors.
  • When error/warning occurred at "Submitter", "Reference", or "Sequence", please go back to previous page by clicking the page name on progress bar. After correction, you must click "Next" on each page, and then click "7.Annotation" on progress bar in order to return to "7.Annotation" page.
  • "Next" button changes to be clickable, even though there are some warnings. Please check again the input data. You should correct if there are any problems. You can click "Next" if you believe that there is no problem in the input data.

You can see detailed description of errors & warnings on URL below.

http://www.ddbj.nig.ac.jp/sub/validator-e.html
Add "#JPxxxx" (xxxx = 4 digits) after the URL for direct link to each page.
e.g.: http://www.ddbj.nig.ac.jp/sub/validator-e.html#JP0015

Please see the pages below about translation errors or warnings occurred at CDS feature.

Message
[WARNING] 'codon_start' qualifier should be selected. The value is automatically set 1.
[WARNING] 'transl_table' qualifier should be selected. The value is automatically set 1.
[WARNING] Amino acid of 'transl_except' qualifier [#Value] is not [Met].
[ERROR] Untranslatable codon [#Codon] is found in the sequence range.
[ERROR] First codon [#Codon] is not a start codon.
[ERROR] Final codon [#Codon] is not a stop codon.
[ERROR] Stop codon '*' is found in the range.
[ERROR] Description of Location [#location of CDS feature] is illegal.
[ERROR] 'codon_start' qualifier is duplicated. The value is automatically set 1.
[ERROR] 'codon_start' qualifier has invalid value [#Value].
[ERROR] 'transl_table' qualifier is duplicated. The value is automatically set 1.
[ERROR] 'transl_table' qualifier has invalid value [#Value].
[ERROR] Amino acid abbreviation [#abbreviation] in 'transl_except' qualifier is illegal.
[ERROR] 'transl_except' qualifier has invalid value [#Value].
[ERROR] Location of 'transl_except' qualifier [#Value] is overlapped.
[ERROR] Location of 'transl_except' qualifier [#Value] is invalid.
[ERROR] Base range of 'transl_except' qualifier [#Value] is mismatched in reading frame.
[ERROR] Amino acid of 'transl_except' qualifier [#Value] is not changed from conceptual translation.
[ERROR] Amino acid of 'transl_except' qualifier [#Value] is not [TERM].
[ERROR] Stop codon is specified by 'transl_except' qualifier [#Value] in mid of CDS location.
[ERROR] Entry [#Entry name] is NOT found in sequence entries.
[FATAL] Proper 'Codon Table' is not found in 'src' folder.
[FATAL] Proper 'Amino Table' is not found in 'src' folder.
[FATAL] Unable to execute Translation.
Please consult the links below.
Definition of Feature key
Definition of Qualifier key
Organism qualifier
CDS feature
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