Please refer Making MSS Files for preparation of annotation file.
Please include only annotation section in annotation file.
You cannot upload WGS, CON, AGP, EST, GSS, STS, HTG, HTC, TSA files. Please contact Mass Submission System (MSS) to submit such submission files.
Information that you entered on the pages, "1. Contact person", "2. Hold date", "3. Submitter", and "4. Reference", are added in front of uploaded annotation file as COMMON section.
When COMMON is included in the uploaded annotation file, if will be replaced with information obtained from "1. Contact person", "2. Hold date", "3. Submitter", and "4. Reference."
For TPA, you should not include PRIMARY_CONTIG section in annotation file. PRIMARY_CONTIG section is automatically inserted to the uploaded annotation file by converting information of the "5.Sequence" page.