DDBJ newly released WGS and scaffold CON data derived from Hitomebore rice (Oryza sativa Japonica Group cv. Hitomebore), which had been submitted by Iwate Biotechnology Research Center.  (Available by getentry )

The accession numbers are as follows ;

• WGS                BACJ01000001 - BACJ01064745 (BACJ.gz) ( 64,745 entries)
• scaffold CON     DG000053 - DG000064 ( 12 entries)

Feature Table Definition (FT-Doc) is the common annotation manual among the three banks (DDBJ, EMBL-Bank, GenBank) for the construction of the DDBJ/EMBL/GenBank International Nucleotide Sequence Database. Feature Table Definition was revised in December 2011. Version is 10.0.

All DDBJ network service will be unavailable, because of the preliminary works for the computer system replacement in NIG scheduled in March, 2012. Details are as follows:

Thank you for your cooperation and understanding.

All services were resumed. Thank you for your cooperation. (Jan. 18 at AM 10:00 JST)

DDBJ newly released 5'SAGE tags, MGA data, derived from human (Homo sapiens), which had been submitted by University of Tokyo. The accession numbers are as follows;

AEAAA0000001-AEAAA0026367 (26,367 entries)
AEAAB0000001-AEAAB0012114 (12,114 entries)
AEAAC0000001-AEAAC0021096 (21,096 entries)
AEAAD0000001-AEAAD0024262 (24,262 entries)
AEAAE0000001-AEAAE0023437 (23,437 entries)
AEAAF0000001-AEAAF0030485 (30,485 entries)
AEAAG0000001-AEAAG0021798 (21,798 entries)
AEAAH0000001-AEAAH0040734 (40,734 entries)
AEAAI0000001-AEAAI0029614 (29,614 entries)
AEAAJ0000001-AEAAJ0030206 (30,206 entries)

Anonymous FTP: AE_resource_index Related site: About Mass sequence Genome for Sequence (MGA) entry

We at DDBJ will temporally close our business for the New Year Holidays in the following schedules, according to the Japanese custom, and resume the normal business on January 4, 2012.
Please note in particular that SAKURA will also stop in operation for a while (see below). However, the computer search and analysis and FTP are available during the holidays.

DDBJ activity suspension:	Dec. 29(Thu), 2011 - Jan. 3(Tue), 2012
SAKURA suspension:	Dec. 27(Tue), 2011 at 17:00(JST) - Jan. 4(Wed), 2012 at 10:00(JST)
data release suspension:	Dec. 27(Tue), 2011 - Jan. 4(Wed), 2012

Thank you for your understanding and cooperation.

November 29, 2011     DDBJ

NIG (National Institute of Genetics) and DDBJ network will be unavailable at the following schedule because of the network maintenance.

• Date: Dec. 6 (Tue), 2011 at 18:30 - 19:30 (JST) (15 minutes interception during this time)

Thank you for your cooperation.

• [2012.07.31] Personal whole genome sequencing data of Prof.Masaru Tomita was released

DDBJ network services will be unavailable at the following schedule because of the electric power outage of the NIG(National Institute of Genetics). Please note that the suspended period depends on the service.

Thank you for your cooperation and understanding.

All services were resumed. Thank you for your cooperation. (Nov. 14 at 12:00 JST)

DDBJ newly released WGS and scaffold CON data derived from a liver fluke (Clonorchis sinensis), which had been submitted by Sun Yat-sen University (China).  (Available by getentry )

The accession numbers are as follows ;

• WGS                BADR02000001 - BADR02006190 (BADR.gz) ( 6,190 entries)
• scaffold CON     DF142828 - DF145382 ( 2,555 entries)

ARSA is a high-speed data retrieval system provided by DDBJ via WWW and Web API. DDBJ and DAD database search in ARSA is unavailable in the following schedule to update each of released data (DDBJ Release 87.0 and DAD Release 57.0).

Details are as follows:

• Date & Time:
    Sep. 30, 2011 (Fri) 9:00 - 20:00 JST (We will announce on this page when the service resumes)
• Unavailable related services:
    ARSA reference function in TX Search
    DNA/Protein/AllDBs search at the search box of the upper part of DDBJ HP

Thank you for your understanding and cooperation.

Maintenance works finished. Thank you for your cooperation. (Sep. 30, 2011 at 18:40)

DDBJ Rel. 87.0

• Date: Sep. 26, 2011
• 142,339,601 entries    131,276,394,833 bases
• DDBJ Release Note
• Latest Release Information

DAD (DDBJ amino acid database) Rel. 57.0

• Date: Sep. 26, 2011
• 21,596,317 entries    6,173,068,786 aa (total number of residues)
• DAD Release Note
• Latest Release Information

DDBJ newly released WGS and scaffold CON data derived from a liver fluke (Clonorchis sinensis), which had been submitted by Sun Yat-sen University (China).

The accession numbers are as follows ;

• WGS                BADR01000001 - BADR01060778 (BADR.gz) ( 60,778 entries)
• scaffold CON     DF126616 - DF142827 ( 16,212 entries)  (Available by getentry )

DDBJ newly released EST and full length cDNA sequence data derived from silkworm (Bombyx mori), which had been submitted by National Institute of Agrobiological Sciences.  (Available by getentry)
Reference: Silkworm Genome Research Program (SGP) The accession numbers are as follows; [EST] FS724152 - FS939542 ( 215,391 entries) FY736910 - FY762881 ( 25,972 entries) [full length cDNA (including HTC)] AK377185 - AK388575 ( 11,160 entries; 231 entries dropped)

in details AK377185 - AK377195 AK377197 - AK388061 AK388063 - AK388065 AK388068 - AK388069 AK388077 - AK388079 AK388100 - AK388102 AK388104 AK388121 AK388124 AK388126 AK388128 AK388131 AK388145 AK388148 AK388150 AK388157 AK388182 AK388184 - AK388185 AK388197 AK388200 AK388215 AK388222 AK388230 AK388241 AK388244 - AK388245 AK388247 AK388249 AK388255 AK388258 - AK388260 AK388263 - AK388264 AK388267 AK388275 - AK388276 AK388283 AK388287 - AK388288 AK388297 AK388310 - AK388311 AK388318 - AK388322 AK388327 - AK388328 AK388330 AK388341 - AK388369 AK388371 - AK388381 AK388383 - AK388391 AK388394 - AK388395 AK388397 - AK388428 AK388430 - AK388473 AK388475 - AK388499 AK388501 - AK388575

DDBJ newly released WGS and scaffold CON data derived from sake yeast (Saccharomyces cerevisiae Kyokai no. 7), which had been submitted by National Research Institute of Brewing.  (Available by getentry)  Reference: Sake yeast genome database (SYGD) The accession numbers are as follows;

• WGS    BABQ01000001 - BABQ01000705 (BABQ.gz) ( 705 entries)
• scaffold CON    DG000037 - DG000052 ( 14 entries)
• mitochondrion    AP012028

ARSA is a high-speed data retrieval system provided by DDBJ via WWW and Web API. DDBJ database search in ARSA is unavailable due to the system error. Details are as follows:

• Date & Time: Sep. 12, 2011 (Mon) AM 8:08 (JST) -- (We will announce on this page when it resumes.)
• Suspended services: DDBJ in ARSA
• Note: Searchable DB is DAD only
  

Thank you for your understanding and cooperation.

Maintenance works finished. Thank you for your cooperation. (Sep. 12, 2011 at 19:00 JST)

NIG (National Institute of Genetics) and DDBJ network will be unavailable at the following schedule because of the network maintenance.

• Date: Sep. 4(Sun), 2011 at AM 2:30 - AM 3:30 (JST)
           Sep. 5(Mon), 2011 at AM 1:00 - AM 3:00 (JST) (60 minutes interception during this time)

Thank you for your cooperation.

FTP server   ftp://ftp.ddbj.nig.ac.jp/

directory name ; from /ddbj_database/ddbjnew/qvalue/ to   /ddbj_database/ddbjnew/qscore/

file name ; from DDBJNEWr##.###.qvalue.gz to   DDBJNEWr##.###.qscore.gz

DDBJ newly released EST data derived from sea squirt (Halocynthia roretzi), which had been submitted by University of Tokushima.

Reference: MAGEST

The accession numbers are as follows ;

• FY844421-FY896670 (52,250 entries)    (Available by getentry)

DDBJ newly released WGS and scaffold CON data derived from Acropora digitifera, which had been submitted by Okinawa Institute of Science and Technology.

Reference:

• Okinawa Institute of Science and Technology
  - Marine Genomics Unit
  Press Release:
    - World's First Coral Genome Decoded
  

• National Institute of Genetics
  Press Release:
    - Coral genome decoded for first time
  

The accession numbers are as follows ;

• WGS                BACK01000001-BACK01053640 (BACK.gz) (53,640 entries)
• scaffold CON     DF093604-DF097774 (4,171 entries)  (Available by getentry )

DDBJ newly released TSA and EST data derived from Botryococcus braunii, which had been submitted by National Institute for Environmental Studies.  (Available by getentry)

The accession numbers are as follows ;

• TSA data    FX056085-FX112549 (56,465 entries)
• EST data    FY358876-FY368220 ( 9,345 entries)

DDBJ newly released patent nucleotide sequence of 1,591,911 entries submitted from Japan Patent Office (JPO). (Available by getentry)

SAKURA is a nucleotide sequence data submission system through the WWW server at DDBJ.
For the urgent maintenance work, SAKURA is suspended at the following schedule.

• Period: June 24, 2011 (Today) 12:00 - June 27, 2011 (Mon) 10:00 (JST)
  

Thank you for your understanding and cooperation.

Maintenance works finished, and the service is available. Thank you for your cooperation. (Jun. 27, 2011 at 9:50)

ARSA is a high-speed data retrieval system provided by DDBJ via WWW and Web API. DDBJ and DAD database search in ARSA is unavailable in the following schedule to update each of released data (DDBJ Release 86.0 and DAD Release 56.0).
Details are as follows:

• Date & Time:
    Jul. 1, 2011 (Fri) 9:00 - 24:00 JST (We will announce on this page when the service resumes)
• Unavailable related services:
    ARSA reference function in TX Search
    DNA/Protein/AllDBs search at the search box of the upper part of DDBJ HP

Thank you for your understanding and cooperation.

Maintenance works finished. Thank you for your cooperation. (Jul. 1, 2011 at 24:00)

DDBJ Rel. 86.0

• Date: Jun. 20, 2011
• 138,030,308 entries    128,745,918,079 bases
• DDBJ Release Note
• Latest Release Information

DAD (DDBJ amino acid database) Rel. 56.0

• Date: Jun. 20, 2011
• 20,742,576 entries    5,912,174,430aa (total number of residues)
• DAD Release Note
• Latest Release Information

DDBJ newly released EST data derived from tammar wallaby (Macropus eugenii), which had been submitted by National Institute of Genetics.

The accession numbers are as follows ;

• FY469875-FY736474 (266,600 entries)    (Available by getentry)

Please understand the databases are decreased for electricity conservation.
Available services:
   - DDBJ and DAD search (Search results do not contain 17DBs entries)
   - ARSA reference function in TX Search

• TPA-WGS    EAAA01000001 - EAAA01006374 (EAAA.gz) (6,374 entries)
• TPA-scaffold CON    HT000001 - HT001272 (1,272 entries)    (Available by getentry)

• WGS BACC01000001-BACC01008583 (8,583 entries)

DDBJ Rel. 85.0

• Date: Mar. 30, 2011
• 132,302,771 entries    124,516,775,718 bases
• DDBJ Release Note
• Latest Release Information

DAD (DDBJ amino acid database) Rel. 55.0

• Date: Mar. 30, 2011
• 19,723,681 entries    5,576,482,211 aa (total number of residues)
• DAD Release Note

DDBJ newly released GSS data derived from African rice (Oryza glaberrima ) 437,642 entries, which had been submitted by National Institute of Agrobiological Sciences.

The accession numbers are as follows ;

• FT434720-FT654719 (220,000 entries) released on Mar. 24
• FT654720-FT872361 (217,642 entries) released on Mar. 25

DDBJ newly released full length cDNA sequence data derived from domesticated barley (Hordeum vulgare subsp. vulgare ), which had been submitted by National Institute of Agrobiological Sciences.

The accession numbers are as follows ;

• AK353559-AK377172 (23,614 entries)

These entries were released as DDBJ daily updates on Mar. 18, 2011.

Service suspension for electricity conservation

Service	Suspended schedule
supernig	from March 14, 2011 (Resuming schedule is not yet determined)
other than above	temporarily (according to the rolling blackout schedule by TEPCO*, DDBJ and NIG belongs to "Group2 SubgroupE" of rotation group) Group2 SubgroupE blackout schedule:   Suspension schedule caused by the implementation of rolling blackouts

Note:

• DDBJ Services will be suspended according to the schedule of electric powercut by Tokyo Electric Power Company (TEPCO).
• DDBJ belongs to "Group2 SubgroupE" in the rotation of elecrtic outage by TEPCO.
• Please understand all services might be suspended without any prior notices.
• We plan to receive data submision as usual as possible, but the availability of the reception services and the schedule of data-exchange among EMBL, GenBank, DDBJ may be affected somehow.
• However, please be aware of unannounced blackout, during your data submission to DDBJ (by SAKURA, MSS, DRA, DTA etc).

Resumed ARSA

Please understand the databases are decreased for electricity conservation. (2011.05.18)
Available services:
   - DDBJ and DAD search (Search results do not contain 18DBs entries)
   - ARSA reference function in TX Search

Resumed BLAST and ClustalW.

Please understand the number of running processes are decreased for electricity conservation. (2011.04.12)

-Resumed MiGAP  (2011.04.15)

-Resumed DDBJ Read Annotation Pipeline  (2011.04.27)

About the service stop according to the rolling blackout

DDBJ network services including NIG supercomputer (supernig) will be unavailable at the following schedule because of the electric power outage. Please note that the suspended period depends on the service.

Thank you for your cooperation and understanding.

DDBJ newly released GSS data derived from rice (Oryza sativa Japonica Group ), which had been submitted by National Institute of Agrobiological Sciences.

The accession numbers are as follows ;

• FT872362-FT932077 (59,716 entries)

These entries were released as DDBJ daily updates on Feb. 25, 2011.

NIG (National Institute of Genetics) network service will be unavailable at the following schedule because of the network maintenance. DDBJ network service and NIG supercomputer (supernig) service will also be unavailable.

• Date: Mar. 1(Tue), 2011 at 19:30 - 21:30 (JST) 30 minutes interception during the above time

Thank you for your cooperation.

DAD released Rel.54.1, because a part of trouble had been found in Rel.54 (released on Jan. 2011).

• Date: Feb. 23, 2011
• 18,867,609 entries:    5,305,638,923aa (total number of residues)
• DAD Release Note
• Latest Release Information

Reference: Apologies for the trouble of in DAD release 54.

DDBJ will continue Sequence Raw Data Archiving

2011/2/22

DDBJ will continue Sequence Raw Data Archiving

DDBJ has been archiving raw data from Sanger sequencers and so called next-generation sequencers as a part of EBI/NCBI/DDBJ International Nucleotide Sequence Database Collaboration (INSDC), by receiving data submissions from sequence centers mainly in Japan and also from several other countries.

The data submitted to DDBJ are processed into INSDC approved format and exchanged among NCBI and EBI frequently to make a same data set in either bank at the timing of data publication to minimize the difference in convenience of data access from all over the world.

In light of the recent announcement that NCBI, who has been playing a hub in raw data archiving, will discontinue its Sequence Read Archive and Trace Archive repositories, DDBJ's archiving will be affected somehow in the near future.

However, at this moment, DDBJ does not plan to discontinue either of the service to meet the demand of the domestic community as well as of the global one.

DDBJ has just started to formulate the plan to minimize the effect to the present activity of INSDC as well as the entire community in collaboration with other INSDC members.

Present status of DDBJ Raw sequence data Archive

• DDDJ raw data archiving accepts submission of raw data from autosequencers to be shared among the whole community.
• This is a part of the International Nucleotide Sequence Database Collaboration (INSDC) which is a collaboration among NCBI/EBI/DDBJ.
• Two types of archiving are provided to accommodate different principles in autosequencers, namely DDBJ Read Archive and DDBJ Trace Archive.

DDBJ Sequence Read Archive(DRA)[2]

• Raw data from so-called next generation sequencers is the subject for archiving.
  • "A Read File" is data representing chronological color change of a spot [3] which corresponds to extension reaction of one independent molecular species from tens to hundreds of bases.
  • Autosequencers can generate millions or more read files by a single run.
  • Resulting raw data from a single run usually amounts to 100 mega byte to 20-30 giga bytes, which is 1/3 of the disk space in an iPad.

Upon submission to DDBJ

• Meta data describing the submitters, materials and methods for the reaction as well as read data will become accessible from either of the INSDC collaborators upon publication.
  • DDBJ will first issue a unique accession number for the submission.
  • DDBJ will make metadata in INSDC format and send it to NCBI which is mirrored in all INSDC.
  • DDBJ will create the submitter's account where necessary data are placed by submitters.
  • DDBJ will convert vender specific raw data files into INSDC approved format (SRA format[4]) via NCBI's service.
  • This step will require data transfer using Aspera server in NCBI for mass data transfer.
  • Usually a single submission amounts in the order of 10 runs and transfer of it takes a few seconds to a few hours.
  • Open access data is accumulated in NCBI likewise from EBI, and by copying the entire open access archive from NCBI frequently, the one same open access dataset is made available from any of the three INSDC sites.
  • The size of the data stored only in one bank depends on the amount of submitted, but unpublished data as well as the personal genome data shared under control by researcher groups.
  • This fraction is usually much more than open access data and NCBI has by far a bigger amount than DDBJ.

The size of the DRA

• As of last week, users can search, browse and download 95,388 runs of open access data from DDBJ.
  • This amounts to 71 tera bytes in the SRA-lite format which lacks only the intensity data found in the SRA format.
  • 71 tera bytes is a disk space of almost one thousand iPads.
  • Submitted but embargo data in DDBJ amounts to 721 runs, which occupies a few tera bytes.
  • DDBJ allocates 273 tera bytes for this service which is planned to be increased in two steps up to 20 peta bytes in the coming 24 months.

Trace Archive at DDBJ (DTA)[5]

• Trace Archive service accepts submission of raw data generated from autosequencers using Sanger reaction to be shared by the entire community.
  • Trace file is a chronological change of color intensities along a single capillary gel or a lane in a gel plate [6]
  • A typical autosequencer generates dozens to a few hundreds of such data by a single run.
  • A trace is a few hundred bases long and amounts to a few hundred kilo bytes.

Upon submission to DDBJ

• Meta data describing experimental background becomes searchable and trace data becomes browsable and downloadable from all INSDC collaborators.
  • DDBJ will help generate meta-data file in an INSDC approved format.
  • DDBJ will create a submitter's account where necessary data are placed by submitters.
  • DDBJ will transfer the data to NCBI and NCBI will issue the unique identifier for the service.
  • DDBJ will store and serve only the trace data submitted to DDBJ.

DDBJ released Rel.84.1, because a part of trouble had been found in Rel.84 (released on Dec. 2010).

• Date: Feb. 21, 2011
• 128,607,035 entries:    120,919,136,706 bases
• DDBJ Release Note
• Latest Release Information

Reference: Apologies for the trouble of in DDBJ release 84.

• Situation: The data that had to be excluded was included.
• Services: Anonymous FTP, ARSA, Homology Search, NIG supercomputer(supernig)
• Measure: DDBJ will releases "DAD release 54.1".

 BCT (44 entries)  / ddbjbct2.DAD.gz, ddbjbct10.DAD.gz
 HUM (13 entries)  / ddbjhum.DAD.gz
 INV (9 entries)   / ddbjinv2.DAD.gz
 PLN (1 entry)     / ddbjpln2.DAD.gz
 SYN (1 entry)     / ddbjsyn.DAD.gz
 VRL (44 entries)  / ddbjvrl1.DAD.gz 
 VRT (274 entries<) / ddbjvrt.DAD.gz

• Situation: The data that had to be excluded was included.
• Services: Anonymous FTP, ARSA, Homology Search, DAD, NIG supercomputer(supernig)
• Measure: DDBJ will releases "DDBJ release 84.1".

 BCT (33 entries)  / ddbjbct2.seq.gz, ddbjbct8.seq.gz, ddbjbct9.seq.gz
 ENV (217 entries) / ddbjenv4.seq.gz, ddbjenv5.seq.gz
 EST (1 entry)     / ddbjest145.seq.gz
 HUM (21 entries)  / ddbjhum6.seq.gz
 INV (9 entries)   / ddbjinv4.seq.gz
 PLN (2 entries)   / ddbjpln5.seq.gz, ddbjpln7.seq.gz
 ROD (27 entries)  / ddbjrod5.seq.gz
 SYN (1 entry)     / ddbjsyn.seq.gz
 VRL (33 entries)  / ddbjvrl1.seq.gz, 
 VRT (403 entries) / ddbjvrt1.seq.gz, ddbjvrt3.seq.gz, ddbjvrt4.seq.gz
 CON (16,633 entries) / ddbjcon5.seq.gz, ddbjcon6.seq.gz, ddbjcon7.seq.gz, ddbjcon8.seq.gz, ddbjcon11.seq.gz

DDBJ newly released 131,507 entries of GSS data derived from mouse (Mus musculus domesticus ), which had been submitted by RIKEN BioResource Center.

The accession numbers  (Anonymous FTP)  are as follows ;

• GA000001-GA131507 (Mus_musculus_domesticus_GSS_110205_1.seq.gz ) (131,507 entries)

Reference URL: RIKEN BioResource Center DNA BANK

These entries were released as DDBJ daily updates on Feb. 5, 2011.

Feature Table Definition(FT-Doc) is the common annotation manual among the three banks(DDBJ, EMBL-Bank, GenBank) for the construction of the DDBJ/EMBL/GenBank International Nucleotide Sequence Database. Following the decision at an International Collaborators Meeting(ICM) held annually in May, this FT-Doc is updated every year. In January 2011, FT-Doc is updated, based on the 23rd International Collaborators Meeting.

ARSA is a high-speed data retrieval system provided by DDBJ via WWW and Web API. DDBJ and DAD database search in ARSA is unavailable in the following schedule to update each of released data (DDBJ Release 84.0 and DAD Release 54.0. Details are as follows:

• Date & Time:   Jan. 28, 2011 (Fri) 9:00 - 21:00 JST (We will announce on this page when the service resumes)
• Unavailable services:   DDBJ and DAD search in ARSA (another 17DBs are searchable. Search results do not contain DDBJ and DAD entries)   ARSA reference function in TX Search   DNA/Protein/AllDBs search at the search box of the upper part of DDBJ HP (another DB search are available)

Thank you for your understanding and cooperation.

Maintenance works finished. Thank you for your cooperation. (Jan. 28, 2011 at 16:30)

DDBJ activities were introduced in the following papers appeared in Nucleic Acids Research Vol.39 Database Issue (Jan.2011).


"The International Nucleotide Sequence Database Collaboration" Guy Cochrane, Ilene Karsch-Mizrachi, and Yasukazu Nakamura on behalf of the International Nucleotide Sequence Database Collaboration. Nucleic Acids Research, 2011, Vol. 39, Database issue D15-D18 "The Sequence Read Archive" Rasko Leinonen, Hideaki Sugawara, and Martin Shumway on behalf of the International Nucleotide Sequence Database Collaboration. Nucleic Acids Research, 2011, Vol. 39, Database issue D19-D21 "DDBJ progress report" Eli Kaminuma, Takehide Kosuge, Yuichi Kodama, Hideo Aono, Jun Mashima, Takashi Gojobori, Hideaki Sugawara, Osamu Ogasawara, Toshihisa Takagi, Kousaku Okubo, and Yasukazu Nakamura. Nucleic Acids Research, 2011, Vol. 39, Database issue D22-D27

• Date: Jan. 14, 2011
• 18,867,995 entries    5,305,737,486aa (total number of residues)
• DAD Release Note
• Latest Release Information

(This was postponed. Today is usual.) ARSA is a high-speed data retrieval system provided by DDBJ via WWW and Web API. DDBJ and DAD database search in ARSA is unavailable in the following schedule to update each of released data (DDBJ Release 84.0, DAD Release 54.0 will be released on Jan. 14, 2011.) Details are as follows:

• Date & Time:   Jan. 21, 2011 (Fri) 9:00 - 18:00 JST (We will announce on this page when the service resumes)
• Unavailable services:   DDBJ and DAD search in ARSA (another 17DBs are searchable. Search results do not contain DDBJ and DAD entries)   ARSA reference function in TX Search   DNA/Protein/AllDBs search at the search box of the upper part of DDBJ HP (another DB search are available)

Thank you for your understanding and cooperation.

DDBJ newly released whole genome and cDNA sequence data of a biofuel crop, Jatropha curcas, which had been submitted by the Kazusa DNA Research Institute.

Reference URL:

• Jatoropha database

The accession numbers (Anonymous FTP download) are as follows;

• genome BAC clones: AP011961-AP011977 (17 entries) WGS : BABX01000001-BABX01150417 (150417 entries)  (Jatropha_curcas_PLN_110107_1.seq.gz) raw data : DRA000305, DRA000306
• cDNA raw data : DRA000303, DRA000304

DDBJ newly released EST data derived from a flatworm (Clonorchis sinensis), which had been submitted by Korea Research Institute of Bioscience and Biotechnology.

The accession numbers are as follows;

• FS126466-FS179210 (52745 entries)