- Personal whole genome sequencing data of Prof.Masaru Tomita (Institute for Advanced Biosciences, Keio University) was released as DRA000583. Data is available at DRASearch.
DDBJ Web Magazine-e No.71 & 72 2012.07.27
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DDBJ Rel. 89.0, DAD (DDBJ amino acid database) Rel. 59.1 Completed
DDBJ/EMBL/GenBank Feature Table Definition revised
Resumed DDBJ Read Annotation Pipeline
MiGap renewal from DDBJ
Release of whole genome sequence data of Solanum lycopersicum
Release of sequence data from DDBJ (May - Jul. 2012)
4. Flat File structure for Japan Patent Office (JPO) -Second part-
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DDBJ Pipeline is now released.
Pipeline’s system was moved to NIG supercomputer, which was newly released at March 2012.
In the new NIG supercomputer, DDBJ Pipeline utilizes 10TB/2TB memory computers for denovo assembly analysis.
Other new features are 1)Velvet tool is revival. 2)A new tool(Trinity:RNA-seq denovo) was furnished. 3) Mate-paired reads are available 4) DRA data to be imported is everyday updated.
Please check the Pipeline’s manual including further explanation for new release.
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DDBJ released EST data derived from a species of planarians (Dugesia japonica), which had been submitted by RIKEN. (Available by getentry )
The accession numbers are as follows;
- FY925127 - FY960824 ( 35,698 entries) 5'-EST
- FY960825 - FY979285 ( 18,461 entries) 3'-EST
total： 54,159 entries（Photo by NBDC）
