What’s New
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DDBJ Rel. 93.0
- Date:Jun. 11, 2013
- 165,072,766 entries 152,702,928,183 bases
- DDBJ Release Note
- Latest Release Information
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DAD (DDBJ amino acid database) Rel. 63.0
- Date: Jun. 11, 2013
- 27,454,545 entries 8,076,539,495 aa (total number of residues)
- DAD Release Note
Suspension of some parts of DDBJ activities during Japanese holidays
Enhancement in DDBJ BLAST
Release of sequence data from DDBJ (Apr. 2013)
New COMMENT format for Japan Patent Office (JPO) data
"FAQ of DDBJ Nucleotide Sequence Submission System" -Vol.2
DDBJ released genome sequence data of mouse (Mus musculus strain MSM/Ms), which had been submitted by National Institute of Genetics.
The accession numbers are as follows. They are available on getentry.
WGS: BAAG010000001-BAAG011237600 (BAAG.gz) (1,237,600 entries)
DDBJ released genome sequence data of a biofuel crop, Jatropha curcas, which had been submitted by the Kazusa DNA Research Institute.
The sequence data are updated version of previously released one.
Reference URL;
Jatoropha database
The accession numbers are as follows. They are available on getentry and DRASearch.
scaffold CON: DF145383-DF157092 (11,710 entries)
WGS: BABX02000001-BABX02066610 (BABX.gz) (66,610 entries)
raw data: DRR001794, DRR001795
- Selections of Data Sets and Divisions were modified
- Get the result by E-mail, as well as in the web screen
- Direct link to the flat file of the corresponding accession number
- Link-up to ClustalW
- Request ID was not included in the URL of the result
- New function Result Viewer was equipped
Selections of Data Sets and Divisions were modifi
(1) Datasets are selected from DDBJ ALL, DDBJ New, 16SrRNA (in case of nucleotide)(2) In the specification of Divisions, you can select general classifications (Standard divisions, High thryoughput divisions, EST divisions , Other divisions), and detailed specification of divisions are available.
get the result by E-mail, as well as web screen
You can select the method of getting the result either E-mail or WWW.direct link to the flat file of the corresponding accession number
You can view the flatfile of the sequences in the getentry.
Request ID was not included in the URL of the result
After pressing the "Send to BLAST" button, Request ID is displayed on the web screen. Don't loose this ID because it is necessary for using the "Result Viewer" and/or inquiring to DDBJ for your search.
New function Result Viewer
You can view your result using "Request ID" at any time (within the retention period).
Link-up to ClustalW
Select the sequences which you would like to suceed the clustalW, then press the "ClustalW" button. Your selected sequences are automatically pasted in the ClustalW query box.
DDBJ will continue to improve the services. Your revies and comments will be helpful for DDBJ's improvement. Please send your comments from "Contact Us" page. (Please select the item "Web Support ")
