DDBJ Rel. 92.0

• Date:Mar. 21, 2013
• 163,017,305 entries     150,760,062,903 bases
• DDBJ Release Note
• Latest Release Information

DAD (DDBJ amino acid database) Rel. 62.0

• Date: Mar. 21, 2013
• 26,351,045 entries     7,698,263,093 aa (total number of residues)
• DAD Release Note

DDBJ released TSA data derived from forest soil metagenome, which had been submitted by National Institute of Advanced Industrial Science and Technology.

The accession numbers are as follows. (Available by getentry and DRASearch)

    TSA: FX000001-FX056084 (56,084 entries)
    raw data: DRR000345

A new directory "unified-all" was added under "ddbj_database" of DDBJ anonymous FTP site. With this addition, a directory, "non-redundant", was renamed to "unified-new"
About the "ddbj_database" directory and its sub-directories, please refer to the README.TXT in the directory. When you monitor the FTP site, please confirm your monitoring program, if necessary.

unified-all; ftp://ftp.ddbj.nig.ac.jp/ddbj_database/ddbjnew/unified-all

This directory contains files of merged sequence entries from all files of ddbj and ddbjnew directories to include only latest version of updated entries (i.e. Succeeded versions of entries have been excluded).

Contents of the directory

　unified-all
　　|- fasta   : in FASTA file format
　　|- blastdb : in BLAST DB format

unified-new; ftp://ftp.ddbj.nig.ac.jp/ddbj_database/ddbjnew/unified-new

This directory contains files of merged cumulative daily updates of sequence entries from all files of ddbjnew directory to include only latest version of updated entries (i.e. Succeeded versions of entries have been excluded) in the flat file format.

Contents of the directory

　unified-new  : in DDBJ flat file format
　　|- fasta   : in FASTA file format
　　|- blastdb : in BLAST DB format

DDBJ network services will be unavailable for power outage

Apologies for defects in WGS data from EMBL-Bank

DAD Rel. 61.1 released

Release of GSS data of African clawed frog (Xenopus laevis)

"FAQ of DDBJ Nucleotide Sequence Submission System" –Vol.1

Some disorders were found in a software tool to load WGS data from EMBL-Bank.
Details are as follows:

Coverage: Subset of WGS data from EMBL-Bank, 64,579 entries with following 175 prefixes.
See also the list of publicized WGS data.

CABT, CACQ, CADR, CAEG, CAEK, CAEL, CAEN, CAEO, CAEP, CAER, CAES, CAET, CAEU, CAEV, CAEW, CAFD, 
CAFH, CAFI, CAFJ, CAFK, CAFM, CAFN, CAFQ, CAGA, CAGB, CAGD, CAGH, CAGI, CAGJ, CAGK, CAGL, CAGM, 
CAGN, CAGO, CAGP, CAGQ, CAGR, CAGS, CAGT, CAGU, CAGV, CAGW, CAGX, CAGY, CAGZ, CAHA, CAHB, CAHC, 
CAHD, CAHE, CAHF, CAHG, CAHH, CAHI, CAHJ, CAHK, CAHL, CAHN, CAHO, CAHP, CAHR, CAHT, CAHU, CAHV, 
CAHW, CAHX, CAHZ, CAIA, CAIB, CAIE, CAIF, CAIG, CAIH, CAII, CAIJ, CAIK, CAIL, CAIM, CAIN, CAIO, 
CAIP, CAIQ, CAIR, CAIT, CAIU, CAJD, CAJE, CAJF, CAJH, CAJJ, CAJK, CAJL, CAJM, CAJN, CAJO, CAJP, 
CAJQ, CAJR, CAJS, CAJT, CAJU, CAJY, CAJZ, CAKA, CAKB, CAKC, CAKD, CAKE, CAKF, CAKM, CAKN, CAKO, 
CAKP, CAKQ, CAKR, CAKS, CAKT, CAKU, CAKV, CAKW, CAKX, CAKY, CAKZ, CALA, CALB, CALC, CALD, CALE, 
CALF, CALG, CALI, CALJ, CALK, CALL, CALU, CALV, CALW, CALX, CALY, CALZ, CAMA, CANE, CANF, CANG, 
CANH, CANI, CANJ, CANO, CANP, CANQ, CANR, CANS, CAOH, CAOI, CAOL, CAOM, CAON, CAOO, CAOR, CAOS, 
CAOT, CAOU, CAOV, CAPF, CAPG, CAPH, CAPI, CAPJ, CAPK, CAPL, CAPM, CAPN, CAPS, CAQO, CAQP

Period: From 2012.03.01 to 2013.02.12
Situation: Invalid format of division in LOCUS line
Services: Anonymous FTP，getentry
Measure: We redistributed and applied the data after fixing the software.

We apologize for your inconvenience.