NBRP, JCM に関連した微生物ゲノム配列データの公開

Last updated:2014.4.9.

東京大学から登録されたNBRPJCM に関連した微生物ゲノム配列データが公開されました。

参考
Genome sequencing of JCM strains under the NBRP program.

アクセッション番号は以下の通りです。getentry, DRASearch または BioProject Search から検索可能です。

scientific name strain WGS DRA BioProject
Escherichia coli JCM 1649 BAIM01000001-BAIM01000080 (BAIM.gz) DRR003147 PRJDB552
Acetobacter sp. JCM 25143 BAIN01000001-BAIN01000177 (BAIN.gz) DRR003145 PRJDB553
Gluconacetobacter sp. JCM 25156 BAIO01000001-BAIO01000947 (BAIO.gz) DRR003146 PRJDB554
Prevotella veroralis JCM 6290 BAIP01000001-BAIP01000065 (BAIP.gz) DRR003163 PRJDB555
Prevotella disiens JCM 6334 BAIS01000001-BAIS01000187 (BAIS.gz) DRR003160 PRJDB558
Prevotella corporis JCM 8529 BAIT01000001-BAIT01000159 (BAIT.gz) DRR003176 PRJDB559
Bacteroides acidifaciens JCM 10556 BAIW01000001-BAIW01000265 (BAIW.gz) DRR003173 PRJDB562
Prevotella enoeca JCM 12259 BAIX01000001-BAIX01000117 (BAIX.gz) DRR003167 PRJDB563
Bacteroides fragilis JCM 11017 BAIY01000001-BAIY01000098 (BAIY.gz) DRR003172 PRJDB564
Prevotella shahii JCM 12083 BAIZ01000001-BAIZ01000142 (BAIZ.gz) DRR003169 PRJDB565
Bacteroides nordii JCM 12987 BAJA01000001-BAJA01000118 (BAJA.gz) DRR003166 PRJDB566
Prevotella loescheii JCM 12249 BAJB01000001-BAJB01000047 (BAJB.gz) DRR003171 PRJDB567
Prevotella oris JCM 12252 BAJC01000001-BAJC01000094 (BAJC.gz) DRR003170 PRJDB568
Prevotella albensis JCM 12258 BAJD01000001-BAJD01000094 (BAJD.gz) DRR003168 PRJDB569
Bacteroides massiliensis JCM 13223 BAJE01000001-BAJE01000166 (BAJE.gz) DRR003165 PRJDB570
Prevotella baroniae JCM 13447 BAJF01000001-BAJF01000094 (BAJF.gz) DRR003164 PRJDB571
Prevotella denticola JCM 13449 BAJG01000001-BAJG01000082 (BAJG.gz) DRR003205 PRJDB574
Prevotella paludivivens JCM 13650 BAJH01000001-BAJH01000097 (BAJH.gz) DRR003204 PRJDB575
Prevotella marshii JCM 13450 BAJI01000001-BAJI01000080 (BAJI.gz) DRR003202 PRJDB576
Bacteroides barnesiae JCM 13652 BAJJ01000001-BAJJ01000065 (BAJJ.gz) DRR003203 PRJDB577
Bacteroides gallinarum JCM 13658 BAJK01000001-BAJK01000141 (BAJK.gz) DRR003190 PRJDB578
Bacteroides salyersiae JCM 12988 BAJL01000001-BAJL01000080 (BAJL.gz) DRR003192 PRJDB579
Porphyromonas uenonis JCM 13868 BAJM01000001-BAJM01000112 (BAJM.gz) DRR003191 PRJDB580
Prevotella pleuritidis JCM 14110 BAJN01000001-BAJN01000049 (BAJN.gz) DRR003189 PRJDB581
Bacteroides propionicifaciens JCM 14649 BAJO01000001-BAJO01000080 (BAJO.gz) DRR003188 PRJDB582
Prevotella amnii JCM 14753 BAJP01000001-BAJP01000159 (BAJP.gz) DRR003187 PRJDB583
Prevotella oulorum JCM 14966 BAJQ01000001-BAJQ01000138 (BAJQ.gz) DRR003186 PRJDB584
Bacteroides paurosaccharolyticus JCM 15092 BAJR01000001-BAJR01000089 (BAJR.gz) DRR003201 PRJDB585
Bacteroides graminisolvens JCM 15093 BAJS01000001-BAJS01000063 (BAJS.gz) DRR003200 PRJDB586
Asaia astilbes JCM 15831 BAJT01000001-BAJT01000049 (BAJT.gz) DRR003199 PRJDB587
Acetobacter sp. JCM 25146 BAJU01000001-BAJU01000127 (BAJU.gz) DRR003198 PRJDB588
Asaia prunellae JCM 25354 BAJV01000001-BAJV01000038 (BAJV.gz) DRR003196 PRJDB589
Acetobacter sp. JCM 25330 BAJW01000001-BAJW01000236 (BAJW.gz) DRR003197 PRJDB590
Prevotella histicola JCM 15637 BAJX01000001-BAJX01000055 (BAJX.gz) DRR003194 PRJDB591
Prevotella falsenii JCM 15124 BAJY01000001-BAJY01000092 (BAJY.gz) DRR003195 PRJDB592
Prevotella maculosa JCM 15638 BAJZ01000001-BAJZ01000133 (BAJZ.gz) DRR003193 PRJDB593
Prevotella nanceiensis JCM 15639 BAKD01000001-BAKD01000022 (BAKD.gz) DRR003210 PRJDB594
Prevotella timonensis JCM 15640 BAKE01000001-BAKE01000179 (BAKE.gz) DRR003211 PRJDB595
Prevotella aurantiaca JCM 15754 BAKF01000001-BAKF01000148 (BAKF.gz) DRR003212 PRJDB596
Prevotella dentasini JCM 15908 BAKG01000001-BAKG01000041 (BAKG.gz) DRR003213 PRJDB597
Prevotella micans JCM 16134 BAKH01000001-BAKH01000108 (BAKH.gz) DRR003214 PRJDB598
Bacteroides rodentium JCM 16496 BAKJ01000001-BAKJ01000148 (BAKJ.gz) DRR003216 PRJDB600
Bacteroides faecichinchillae JCM 17102 BAKK01000001-BAKK01000144 (BAKK.gz) DRR003217 PRJDB601
Bacteroides stercorirosoris JCM 17103 BAKL01000001-BAKL01000203 (BAKL.gz) DRR003218 PRJDB602
Bacteroides sartorii JCM 17136 BAKM01000001-BAKM01000160 (BAKM.gz) DRR003219 PRJDB603
Prevotella saccharolytica JCM 17484 BAKN01000001-BAKN01000082 (BAKN.gz) DRR003220 PRJDB604
Prevotella fusca JCM 17724 BAKO01000001-BAKO01000116 (BAKO.gz) DRR003221 PRJDB605
Prevotella scopos JCM 17725 BAKP01000001-BAKP01000113 (BAKP.gz) DRR003222 PRJDB606
Porphyromonas macacae JCM 13914 BAKQ01000001-BAKQ01000044 (BAKQ.gz) DRR003223 PRJDB607
Porphyromonas cangingivalis JCM 15983 BAKR01000001-BAKR01000048 (BAKR.gz) DRR003224 PRJDB608
Porphyromonas macacae JCM 15984 BAKS01000001-BAKS01000069 (BAKS.gz) DRR003225 PRJDB609
Escherichia coli JCM 18426 BAKT01000001-BAKT01000237 (BAKT.gz) DRR003227 PRJDB610
Salmonella enterica subsp. enterica serovar Typhimurium JCM 1652 BAKU01000001-BAKU01000087 (BAKU.gz) DRR003226 PRJDB611
Escherichia coli JCM 20135 BAKV01000001-BAKV01000084 (BAKV.gz) DRR003228 PRJDB612
Asaia platycodi JCM 25414 BAKW01000001-BAKW01000035 (BAKW.gz) DRR003229 PRJDB613
Porphyromonas gingivicanis JCM 15907 BAKX01000001-BAKX01000035 (BAKX.gz) DRR003230 PRJDB614
Escherichia coli JCM 5491 BAKY01000001-BAKY01000136 (BAKY.gz) DRR003231 PRJDB615
Klebsiella pneumoniae subsp. pneumoniae JCM 1662 BAKZ01000001-BAKZ01000201 (BAKZ.gz) DRR003232 PRJDB619
Acinetobacter baumannii JCM 6841 BALA01000001-BALA01000118 (BALA.gz) DRR003233 PRJDB620
Lactobacillus gallinarum JCM 2011 BALB01000001-BALB01000074 (BALB.gz) DRR003234 PRJDB621
Legionella pneumophila subsp. pneumophila JCM 7571 BALD01000001-BALD01000062 (BALD.gz) DRR003236 PRJDB623
Campylobacter jejuni subsp. jejuni JCM 2013 BALI01000001-BALI01000048 (BALI.gz) DRR003244 PRJDB627
Prolixibacter bellariivorans JCM 13498 BALJ01000001-BALJ01000092 (BALJ.gz) DRR003245 PRJDB628
Marinilabilia salmonicolor JCM 21150 BALK01000001-BALK01000105 (BALK.gz) DRR003246 PRJDB629
Shewanella haliotis JCM 14758 BALL01000001-BALL01000125 (BALL.gz) DRR003247 PRJDB630
Shewanella marina JCM 15074 BALM01000001-BALM01000075 (BALM.gz) DRR003248 PRJDB631
Shewanella putrefaciens JCM 20190 BALN01000001-BALN01000049 (BALN.gz) DRR003249 PRJDB632
Shewanella algae JCM 21037 BALO01000001-BALO01000108 (BALO.gz) DRR003250 PRJDB633
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 BALP01000001-BALP01000150 (BALP.gz) DRR003251 PRJDB634
Lactobacillus gasseri JCM 1131 BALQ01000001-BALQ01000020 (BALQ.gz) DRR003252 PRJDB635
Lactobacillus acidophilus JCM 1132 BALR01000001-BALR01000026 (BALR.gz) DRR003253 PRJDB636
Lactobacillus casei JCM 1134 BALS01000001-BALS01000178 (BALS.gz) DRR003254 PRJDB638
Lactobacillus rhamnosus JCM 1136 BALT01000001-BALT01000063 (BALT.gz) DRR003255 PRJDB639
Lactobacillus kitasatonis JCM 1039 BALU01000001-BALU01000035 (BALU.gz) DRR003256 PRJDB640
Lactobacillus plantarum subsp. plantarum JCM 1149 BALV01000001-BALV01000039 (BALV.gz) DRR003257 PRJDB641
Lactobacillus sakei subsp. sakei JCM 1157 BALW01000001-BALW01000037 (BALW.gz) DRR003258 PRJDB642
Lactococcus lactis subsp. lactis JCM 5805 BALX01000001-BALX01000088 (BALX.gz) DRR003259 PRJDB643
Lactobacillus hamsteri JCM 6256 BALY01000001-BALY01000081 (BALY.gz) DRR003260 PRJDB644
Pseudomonas aeruginosa JCM 5962 BAMA01000001-BAMA01001198 (BAMA.gz) DRR003276,DRR003277 PRJDB616
Pseudomonas aeruginosa JCM 6119 BAMB01000001-BAMB01001377 (BAMB.gz) DRR003278,DRR003279 PRJDB617
Pseudomonas aeruginosa JCM 14847 BAMC01000001-BAMC01001245 (BAMC.gz) DRR003280,DRR003281 PRJDB618
Porphyromonas bennonis JCM 16335 BAME01000001-BAME01000242 (BAME.gz) DRR003284,DRR003285 PRJDB625
Bacteroides sartorii JCM 16497 BAMF01000001-BAMF01000694 (BAMF.gz) DRR003286,DRR003287 PRJDB626
Lactobacillus kefiranofaciens subsp. kefiranofaciens JCM 6985 BAMG01000001-BAMG01000123 (BAMG.gz) DRR003288 PRJDB645
Lactobacillus paralimentarius JCM 10415 BAMH01000001-BAMH01000210 (BAMH.gz) DRR003289 PRJDB646
Lactobacillus equi JCM 10991 BAMI01000001-BAMI01000158 (BAMI.gz) DRR003290 PRJDB647
Lactobacillus fuchuensis JCM 11249 BAMJ01000001-BAMJ01000071 (BAMJ.gz) DRR003291 PRJDB648
Lactobacillus hayakitensis JCM 14209 BAML01000001-BAML01000082 (BAML.gz) DRR003293 PRJDB650
Lactobacillus apodemi JCM 16172 BAMM01000001-BAMM01000063 (BAMM.gz) DRR003295 PRJDB651
Lactobacillus nodensis JCM 14932 BAMN01000001-BAMN01000052 (BAMN.gz) DRR003294 PRJDB652
Bacillus mannanilyticus JCM 10596 BAMO01000001-BAMO01000108 (BAMO.gz) DRR003296,DRR003297 PRJDB653
Nitratireductor aquibiodomus JCM 21793 BAMP01000001-BAMP01000207 (BAMP.gz) DRR003300 PRJDB654
Burkholderia kururiensis JCM 10599 BAMQ01000001-BAMQ01002352 (BAMQ.gz) DRR003298,DRR003299 PRJDB655
Kordiimonas gwangyangensis JCM 12864 BAMR01000001-BAMR01000044 (BAMR.gz) DRR003301 PRJDB656
Sneathiella glossodoripedis JCM 23214 BAMS01000001-BAMS01000012 (BAMS.gz) DRR003302 PRJDB657
Methylobacillus glycogenes JCM 2850 BAMT01000001-BAMT01000028 (BAMT.gz) DRR003303 PRJDB658
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