DDBJ staff presentations (2009-)

2017

2016

  • JGA: Japanese Genotype-phenotype Archive Yuichi Kodama, Jun Mashima, Mari T. Minowa, Minae Kawashima, Kazunori Miyazaki, Nobutaka Mitsuhashi, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi The Plant and Animal Genome XXIV Conference (PAG) Oct 20,2016
  • Database Resources of DNA Data Bank of Japan Yuichi Kodama, Jun Mashima, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi The Plant and Animal Genome XXIV Conference (PAG) Jan 10,2016

2012

  • DNA Data Bank of Japan: trad and new databases Yasukazu Nakamura Information Sources in Biotechnology: Key Databases for Patenting Biotechnology. A seminar organized by The European Bioinformatics Institute and FCO Science and Innovation Network July 24,2012
  • DDBJ Sequence Read Archive and a cloud-computing based annotation tool for new-generation sequencing data Nagasaki, H.,Mochizuki, T.,Kaminuma, E.,Kodama Y.,Saruhashi, S.,Toshihisa, T.,Okubo, K.,Nakamura Y. The International Plant & Animal Genome XX Conference Jan 14,2012

2011

  • DDBJ Sequence Read Archive and a cloud-computing based analytical pipeline for next-generation sequencing reads Satoshi Saruhashi, Takako Mochizuki, Hideki Nagasaki, Yuichi Kodama, Asami Nozaki, Kyung-Bum Lee, Toshihisa Okido, Emi Yokoyama, Eli Kaminuma, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura SOL&ICuGI 2011: 8th Solanaceae and 2nd Cucurbitaceae Genome Joint Conference Nov 28,2011
  • DDBJ Sequence Read Archive and a cloud-computing based annotation tool for next-generation sequencing data Hideki Nagasaki, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Toshihisa Takagi, Kousaku Okubo, Eli Kaminuma, Yasukazu Nakamura The 2nd International Conference on the Progress of “1000 Plant & Animal Reference Genomes Project July 10-12,2011
  • DDBJ Read Annotation Pipeline: A cloud based pipeline for high-throughput analysis of next generation sequencing data Nagasaki, H., Mochizuki, T., Watanabe S., Morizaki, S., Kodama Y., Saruhashi, S., Takagi T., Okubo K., Kaminuma E., Nakamura, Y. Plant and Animal Genome XIX Conference Jan 15,2011

2010

  • DDBJ Read Annotation Pipeline: A Cloud Computing Based Analytical Tool for Next-generation Sequencing Data Yasukazu Nakamura Biocuration 2010 Oct 14,2010
  • DDBJ Sequence Read Archive / DDBJ Omics Archive Yuichi Kodama, Saruhashi Satoshi, Eli Kaminuma,Hideaki Sugawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura 4th Biocuration Conference Oct 11,2010
  • DDBJ Sequence Read Annotation Pipeline; A cloud computing-based analytical tool for next-generation sequencing data Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura 10th Cold Spring Harbor Laboratory/Wellcome Trust conference on Genome Informatics Sep 15-19,2010
  • DDBJ Omics Archive and DDBJ Read Annotation Pipeline: archive and analyze quantitative data from next generation platforms Yuichi Kodama 13th International MGED Meeting July 13,2010
  • DDBJ Read Annotation Pipeline: A web-based analytical tool for next-generation sequencing data Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura 18th Annual International Conference on Intelligent Systems for Molecular Biology(ISMB2010) July 9-13,2010
  • Plant SNP annotation using a web-based pipeline tool for next-generation sequencing data Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura The 21th International Conference on Arabidopsis Research June 7-9,2010
  • DDBJ Read Archive - Public archive for output data from next-generation sequencer Satoshi Saruhashi, Yuichi Kodama, Eli Kaminuma, Takashi Gojobori, Toshihisa Takagi, Kousaku Okubo, Hideaki Sugawara, Yasukazu Nakamura The 5th NIG Poster Workshop May 26,2010
  • Application of Google apps as a tool for cooperative work and collaborative study: example case in DDBJ - for the purpose of scaling up from DDBJ to all NIG - Takehide Kosuge, Takako Mochizuki, *Shigeki Watanabe, Jun Mashima, Eli Kaminuma, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura The 5th NIG Poster Workshop May 26,2010
  • A Cloud computing based Analysis System for the Next Generation sequencing Data Takako Mochizuki, Eli Kaminuma, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura The 5th NIG Poster Workshop May 26,2010

2009

  • DDBJ Sequence Read Archive and DDBJ Read Annotation Pipeline: An archive database and an analytical tool for next-generation sequence data Eli Kaminuma, Yuichi Kodama, Satoshi Saruhashi, Takeshi Konno, Takako Mochizuki, Hidemasa Bono, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura The 20th International Conference on Genome Informatics Dec 14-16,2009
  • Consecutive Update of the Microbial Genome Re-Annotation Database, GTPS Takehide Kosuge, Yasumasa Shigemoto, Yoshikazu Kuwana, Hideaki Sugawara The 20th International Conference on Genome Informatics Dec 14-16,2009
  • Systematic Organization of Gene Expression Data in Japan Hidemasa Bono, Eli Kaminuma, Yuichi Kodama, Yasukazu Nakamura, Kousaku Okubo, Toshihisa Takagi 12th International MGED Meeting Dec 5-8,2009
  • CIBEX Yuichi Kodama, Yoshio Tateno, Kazuho Ikeo 12th International MGED Meeting Dec 5-8,2009
  • DNA Data Bank of Japan, DDBJ Kyungbum Lee Korean Bioinformation Center (KOBIC) Aug 19,2009
  • Constructing a high-throughput annotation pipeline of next generation sequencing reads Eli Kaminuma, Yasukazu Nakamura, Toshihisa Takagi The 4th NIG Poster Workshop May 26,2009
  • DDBJ Activities: Contribution to the Research in Information Biology Jun Mashima, Takehide Kosuge, Toshihisa Okido, Yuichi Kodama, Kazuho Ikeo, Hideaki Sugawara, Yoshio Tateno, Takeshi Gojobori The 3rd International Biocuration Conference Apr 16-19,2009