You can access the public DRA data through https/ftp and in the NIG supercomputer.
You can retrieve the filepath by searching accession numbers in the DDBJ Search.
- https: https://ddbj.nig.ac.jp/public/ddbj_database/dra
- ftp: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra
- ascp: anonftp@ascp.ddbj.nig.ac.jp:/ddbj_database/dra
- Supercomputer: /usr/local/resources/dra
https
Access through your web browser.
Examples:
DRR000001 fastq
- https://ddbj.nig.ac.jp/public/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001.fastq.bz2
- https://ddbj.nig.ac.jp/public/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001_1.fastq.bz2
- https://ddbj.nig.ac.jp/public/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001_2.fastq.bz2
DRR000001 sra
- https://ddbj.nig.ac.jp/public/ddbj_database/dra/sra/ByExp/sra/DRX/DRX000/DRX000001/DRR000001/DRR000001.sra
ftp
Download files by wget etc.
Examples:
DRR000001 fastq
wget ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001.fastq.bz2
wget ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001_1.fastq.bz2
wget ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001_2.fastq.bz2
DRR000001 sra
wget ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/sra/ByExp/sra/DRX/DRX000/DRX000001/DRR000001/DRR000001.sra
ascp
Installing Aspera and install the aspera.
To download data, please see How to use Aspera.
Supercomputer
You can direcly access the public data at /usr/local/resources/ in the General Analysis Section of the NIG supercomputer.
Examples: Copy DRR000001 fastq files to your home directory.
cp /usr/local/resources/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001.fastq.bz2 ~/
cp /usr/local/resources/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001_1.fastq.bz2 ~/
cp /usr/local/resources/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001_2.fastq.bz2 ~/