WGS of cells

JGA Dataset Accession: JGAD000079.v2.p1

Dataset Description

Whole genome sequencing (WGS) of AKT cells

  • Samples: 20
  • Files: 40 (download filelist)
  • Total filesize: 10 GB (10,000,000,088 bytes)

Controlled-access Data

Sequencing data (Run)

Download dataset table for sequencing data (Run)

download run filelist

NCBI SRA は bam Run の reference 情報を SRA file と DB に格納しておりそれを表示している。JGA では Run XML に記載要素を設けてあるのでそれを表示する。リストのダウンロード提供のみ。

Experiment accession Sample accession Experiment title Library name Library source Library selection Library strategy Library layout Insert size Instrument model Run accession Reference
JGAX000001026 JGAN000000006 WGS of T-All patient 1 library 1 GENOMIC RANDOM WGS PAIRED 100 Illumina HiSeq 2500 JGAR000000020
JGAX000001027 JGAN000000007 WGS of T-All patient 2 library 2 GENOMIC RANDOM WGS PAIRED 100 Illumina HiSeq 2500 JGAR000000021 GRCh37
JGAX000001027 JGAN000000007 WGS of T-All patient 3 library 3 GENOMIC RANDOM WGS PAIRED 100 Illumina HiSeq 2500 JGAR000000022

Other data (Analysis)

Download dataset table for other data (Analysis)

download analysis filelist

リストのダウンロード提供のみ。

Analysis accession Samples Subjects Analysis type Analysis title Platform Program Reference Data type
JGAZ000000001 20 20 MICROARRAY Genotyping of 100 Japanese by microarray Illumina Ominiexpress iScan Chip-chip
JGAZ000000002 1 1 REFERENCE_ALIGNMENT Alignment to GRCh37 genome Illumina HiSeq 2500 HISAT2 GRCh37
JGAZ000000003 1 1 SEQUENCE_VARIATION Variation summary of participants variant caller v1.2.0 GRCh37 CNV genotypes obtained using sequence data (imputation)
JGAZ000000004 10 5 SAMPLE_PHENOTYPE Phenotype table