DDBJ sitemap

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Data Submission
How to Use
Search/Analysis
FTP/API
Reports/Statistics
Contact Us


Data Submission
Points to be preliminary checked
Before Nucleotide Sequence Submission
Accession Number Assigned by INSD
Master-List of acc# prefix letters
Acceptable data for DDBJ
Sequence Data Transition
Principle of "Hold-Until-Published" data release
Overview of International Nucleotide Sequence Databases Policies
Submitter, Contact person, and other terms
Patent, Intellectual Property and Priority
Accession Number Assigned by INSD
Methods for Submission
SAKURA
What is Mass Submission System (MSS)?
WGS submission (Whole Genome Shotgun (WGS) sequences data)
TPA (What is the Third Party Annotation sequence?)
TPA table
PRIMARY
MGA submission(About Mass sequence Genome for Sequence (MGA) entry)
MGA
Variable record
TSA submission (What is TSA? - Transcriptome Shotgun Assembly)
References
DDBJ/EMBL/GenBank Feature Table Definition
LOCUS
DEFINITION
ACCESSION
VERSION
KEYWORDS
SOURCE
REFERENCE 1
REFERENCE 2
COMMENT
FEATURES
BASE COUNT
ORIGIN
//
Example of Submission
Definition of Feature Key
Definition of Qualifier key
Feature/Qualifier Usage Matrix
Organism qualifier
CDS feature
Description of Location
Nucleotide Base Codes
Modified Base Abbreviations
Amino Acid Codes
Modified and Unusual Amino Acids


How to Use
Q and A
Data Submission
Explanation of DDBJ flat file format
DDBJ/EMBL/GenBank Feature Table Definition
Example of Submission
Organism Name
Protein Coding Sequence
Description of Location
Feature/Qualifier Usage Matrix
Feature Key
Qualifier Key
Codes Used in Sequence Description
Training Course, Publications, Mail Magazine
DDBJ Mail Magazine
DDBJ Publications online
Japan-Korea-China Bioinformatics Training Course
Search and analysis service references.


Search/Analysis
Database Search
getentry
ARSA
TXSearch
Homology Search
BLAST
DDBJ Vector Screening System
Phylogenetics
ClustalW    ※suspended
Submission of Gene Expression Data
CIBEX
Genome Analyses
GIB    ※suspended
GIB-V    ※suspended
GTPS
GTOP    ※suspended
Protein Database and Structure
ＰＭＤ    ※suspended
Software developed at CIB-DDBJ
WINA


FTP/WebAPI
FTP Server ftp://ftp.ddbj.nig.ac.jp/
Latest Release Information
DDBJ Release in the flat file format
ftp://ftp.ddbj.nig.ac.jp/ddbj_database/ddbjnew/
DDBJ Release Notes
DAD Release
New DAD data (daily update)
DAD Release Notes
16S rRNA (Prokaryotes) in FASTA format
TPA
Data other than DDBJ Release
WGS data
MGA data
DRA and DTA data
DDBJ Trace Archive
DDBJ Sequence Read Archive
Mirrored Databases
Data usage policies of softwares and data provided through DDBJ


Report/Statistics
Introduction of DDBJ
Introduction of DDBJ
What's New
DDBJing : How to Use DDBJ?
DDBJ Publications online
DDBJ MailMagazine
Data Submission Q and A
Training Course
Japan-Korea Bioinformatics Training Course
Faculty Staff of DDBJ
DDBJ activity publications
DDBJ activity oral presentation (2009-)
DDBJ staff publications (-2008)
DDBJ staff Oral presentation (-2008)
DDBJ Release Notes
DDBJ Release Information
DDBJ Release Notes
DAD Release Notes
Meetings and Conferences
The Report for INSD International Collaborators Meeting
Meetings and Conferences Related to DDBJ
H-Invitational
Conference on Information Biology
Statistics on DDBJ release
Latest Release Information
DDBJ/EMBL/GenBank database growth
Proportion of contribution to the DDBJ/EMBL/GenBank International Nucleotide Sequence Database (entry)
Proportion of contribution to the DDBJ/EMBL/GenBank International Nucleotide Sequence Database (nucleotides)
Top1000 organisms according to total number of nucleotides
Journal ranking top 100
DDBJ Data Submission Activities
Submissions to DDBJ (Ordinary submission by SAKURA / TPA by SAKURA / Mass Submission System Usage)
Numbers of WGS data submitted to DDBJ
Statistics on Accesses to DDBJ websites
Access to DDBJ web server


Contact Us
E-mail Addresses Related to DDBJ Activities
Inquiry to the sequence submitters (submitted to DDBJ)
Postal Address
Access to NIG: