DDBJ sitemap

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Introduction of DDBJ
Data Submission
Search/Analysis
Super Computer
Data Archive
DDBJing Contents: How to Use DDBJ
Report/Statistics
Q and A
Contact us

Data Submission

DDBJ Nucleotide Sequence Submission System
Mass Submission System (MSS)
DDBJ Sequence Read Archive (DRA)
DDBJ Trace Archive (DTA)
DDBJ BioProject Database

Nucleotide Sequence Submission

Points to be preliminary checked

Before Nucleotide Sequence Submission

Accession Number Assigned by INSD

Prefix letter list

Acceptable data for DDBJ

Sequence Data Transition

Principle of "Hold-Until-Published" data release

Overview of International Nucleotide Sequence Databases Policies

Submitter, Contact person, and other terms

Patent, Intellectual Property and Priority

Methods for Submission

DDBJ Nucleotide Sequence Submission System

What is Mass Submission System (MSS)?

Data Submission from Genome Project

WGS submission (Whole Genome Shotgun (WGS) sequences data)

TPA (What is the Third Party Annotation sequence?)

TPA table

PRIMARY

MGA submission(About Mass sequence Genome for Sequence (MGA) entry)

MGA

variable record

What is TSA? – Transcriptome Shotgun Assembly

Data Updates

Contact form for Data Update Requests

QandA for Data Updates

References

DDBJ/EMBL/GenBank Feature Table Definition

Explanation of DDBJ flat file format

Example of Submission

Definition of Feature Key

Definition of Qualifier key

Feature/Qualifier Usage Matrix

Organism qualifier

CDS feature

Description of Location

Nucleotide Base Codes

Modified Base Abbreviations

Amino Acid Codes

Modified and Unusual Amino Acids

Search/Analysis

Services for Search/Analysis

Database Search

DDBJ Vector Screening System

Phylogenetics

Genome Analyses

Next Generation Sequence Analysis

DDBJ Read Annotation Pipeline

Protein Database and Structure

ＰＭＤ

Help

References

Search and Analysis service References

How to Create Links to DDBJ Entries

Super Computer

NIG SuperComputer

about NIG SuperComputer

FTP Data Archive

Download the data

FTP: ftp://ftp.ddbj.nig.ac.jp/

Latest Release Information

DDBJ Releases

DDBJ Release Notes

DDBJ Periodical Release

DDBJ New data (daily update)

16S rRNA (Prokaryotes) in FASTA format

DAD Release Notes

DAD Periodical Release

DAD New data (daily update)

Data other than DDBJ Release

TPA

WGS

MGA

DRA and DTA

DDBJ Sequence Read Archive data

DDBJ Trace Archive data

Project data

DDBJ BioProject Database data

DDBJing Contents: How to Use DDBJ

Q and A

Data Submission

Explanation of DDBJ flat file format

Example of Submission

Organism qualifier

CDS feature

DDBJ/EMBL/GenBank Feature Table Definition

Description of Location

Feature/Qualifier Usage Matrix

Definition of Feature Key

Definition of Qualifier key

Codes Used in Sequence Description

References for DDBJ services

Search and Analysis service References

How to Create Links to DDBJ Entries

Manuals/References

Data Submission

DRA video tutorials

BioProject video tutorials

Search/Analysis

References for DDBJ Services

How to Create Links to DDBJ Entries

Training Course, Publications, Web Magazine

News Archive

Reports

DDBJing Contents: How to Use DDBJ

Publications online

DDBJ Web Magazine

Faculty Staff of DDBJ

DDBJ activity publications

DDBJ activity oral presentation (2009-)

DDBJ staff publications (-2008)

DDBJ staff Oral presentation (-2008)

DDBJ Release Notes

Latest Release Information

DDBJ Release Notes

DAD Release Notes

and Conferences

International Collaborators Meeting

Conferences Related to DDBJ

H-Invitational

Statistics

Statistics on DDBJ release

Latest Release Information

DDBJ/EMBL/GenBank database growth

Proportion of contribution to the DDBJ/EMBL/GenBank International Nucleotide Sequence Database (entries)

Proportion of contribution to the DDBJ/EMBL/GenBank International Nucleotide Sequence Database (nucleotides)

Top1000 organisms according to total number of nucleotides

Journal ranking top 100

Division-Bank distribution in the DDBJ Release (entries | bases)

DDBJ Data Submission Activities

Monthly Data Submissions to DDBJ(11/2012～)(Submissions from WWW/ Mass Submission System Usage)

Submissions from SAKURA/ Mass Submission System Usage)

To DDBJ

Do not block E-mails from DDBJ

Contact form to DDBJ

Application Form for Data Update Requests

Postal address·Access

Sequence submitters

Inquiry to the sequence submitters (submitted to DDBJ)