DDBJ sitemap

	DDBJ sitemap Japanese
Search for

SAKURA	Mass Sub
Data Updates

ARSA	getentry
TXSearch
FASTA	BLAST
SSEARCH	HMMPFAM
ClustalW
WebAPI
GIB	GIB-V
GTPS	GTOP

DDBJ Release Note

Release Information

Conference on Info Bio

Top page	about DDBJ
	Data Submission
	Search and Analysis
	Breakdown Statistics
	Download data
	Q and A
	Doors for Information Biology


Top page	What's New

about DDBJ	Introduction of DDBJ International Nucleotide Sequence Database Collaboration addresses related to ddbj activities faculty staff of DDBJ
	INSDC Activity Report Overview of International Nucleotide Sequence Databases Policies DDBJ/EMBL/GenBank Feature Table Definition - HTML version - PDF version International Collaborators Meeting Report - 21th (May 20-22, 2008. Japan) - 20th (May 21-23, 2007. UK) - 19th (May 15-17, 2006. USA) - 18th (May 16-18, 2005. Japan)
	DDBJing (Japanese only)
	DDBJ Mail Magazine
	Breakdown Statistics
	DDBJ Release Information
	DDBJ publications online	DDBJ mail magazine (Japanese only) DDBJ/CIB Report 2006 \| 2005 \| 2004 \| 2003 \| 2002 \| 2001 \| 2000 \| 1999 \| 1998 \| DDBJ News Letter No. 17 (1997) \| DDBJ News Letter No. 16 (1996) DDBJ/CIB Report (PDF) 2008 \| 2007 \| 2006 \| 2005 \| 2004 \| 2003 \| 2002 \| 2001 \| 2000 \| 1999 \|
	DDBJ staff publications DDBJ staff oral presentation Conference and symposium related to DDBJ H-Invitational NIG computer maintenance information From CIB-DDBJ WINA DendroMaker for Macintosh


Nucleotide Sequence Submission	Points to be preliminary checked
		Before Nucleotide Sequence Submission
		Accession Number Assigned by INSD
			Master-List of acc# prefix letters
		Acceptable data for DDBJ
		Sequence Data Transition
		Principle of "Hold-Until-Published" data release
		Overview of International Nucleotide Sequence Databases Policies

		Patent, Intellectual Property and Priority
	Methods for Submission

		SAKURA
		What is Mass Submission System (MSS)?

		WGS submission (Whole Genome Shotgun (WGS) sequences data)
		TPA (What is the Third Party Annotation sequence?)
			TPA table
			PRIMARY
		MGA submission(About Mass sequence Genome for Sequence (MGA) entry)
			MGA
			Variable record
		Sequin
		Data Updates/Correction: after getting your accession number
		Data Submission to DDBJ Read Archive(DRA)
		Data Submission to DDBJ Trace Archive(DTA)
	References
		DDBJ/EMBL/GenBank Feature Table Definition
		PDF: DDBJ/EMBL/GenBank Feature Table Definition
		Explanation of DDBJ flat file format

			LOCUS
			DEFINITION
			ACCESSION
			VERSION
			KEYWORDS
			SOURCE
			REFERENCE 1
			REFERENCE 2
			COMMENT
			FEATURES
			BASE COUNT
			ORIGIN
			//
		Example of Submission
		Definition of Feature Key
		Definition of Qualifier key
		Feature/Qualifier Usage Matrix
			PDF: Feature/Qualifier Usage Matrix
		Organism Qualifier
		CDS feature
		Description of Location
		Nucleotide Base Codes
			Modified Base Abbreviations
			Amino Acid Codes
			Modified and Unusual Amino Acids


Search and Analysis	Database Searches getentry SRS (Terminated as of Dec. 26, 2008.) ARSA XML Central of DDBJ TXSearch	How to Create Links to DDBJ Entries
	Homology Search FASTA BLAST PSI-BLAST SSEARCH	Utility Result Viewer Others what's new \| Traffic \| About \|
	HMMPFAM DDBJ Vector Screening System SQmatch (Terminated as of Nov. 14, 2008.) CIBEX
	Anonymous FTP of the DDBJ E-mail Search server/Anonymous FTP
	Data Analyses ClustalW	Utility Result Viewer Others what's new \| Traffic \| About \|
	E-mail Search server/Anonymous FTP
	Genome Analyses H-Invitational Database CIB-DDBJ Flat File Server suspension for the maintenance (Sep.12, 2007) Mirroring H-InvDB GIB GTOP
	Protein Database and Structure PMD PDB Retriever (Terminated as of Nov. 14, 2008.) LIBRA l (Terminated as of Nov. 14, 2008.) Lib score (Terminated as of Nov. 14, 2008.) getentry SRS (Terminated as of Dec. 26, 2008.)
	References Software developed at CIB-DDBJ WINA DendroMaker for Macintosh

Breakdown Statistics	Content of each DDBJ division Geographical distribution of submitters to INSDC Trends in data submission database growth graph \| Table Release Information Top1000 organisms (nucleotides) Proportion of contribution to the INSD [entry] graph \| Table Proportion of contribution to the INSD [nucleotides] graph \| Table Journal ranking by entries \| by papers Numbers of new and updated entries per month EST submissions \| Genome submissions \| Ordinary submissions \| Total \| Anatomy of Ordinary DNA data submissions to DDBJ Numbers of MSS usage Numbers of TPA data submitted to DDBJ Numbers of WGS datasubmitted to DDBJ Accesses to DDBJ WWW server Top 30 organisms (nucleotides)

Download data	ftp site DDBJ Release Note DAD Release Note DDBJ Release Information

Q and A	Data Submission

Doors for Information Biology	Understanding Information Biology What are genome and gene (in Japanese) Introduction to Evolutionary Genomics (in Japanese) Link to NIG web pages on Information Biology Link to CIB/DDBJ web pages on Information Biology Link to Other web pages on Information Biology Conference on Information Biology

Last modified: Mar. 11, 2010