Last updated:2014.6.25.

FAQ

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Tag Search(NSSS:DDBJ Nucleotide Sequence Submission System , MSS:Mass Submission System)

FAQs 6 : Tag = getentry
Can I confirm previous version of the sequence data? getentry search update

Previous versions of sequence data are available by using getentry webAPI.

See gethistory on getentry HELP.

Last Updated:June 25, 2014
What is the search service that the latest data are available at the earliest period? getentry search

It is getentry.
"getentry" is a system for data retrieval by accession numbers, etc.
In general, the sequence data will be available on getentry from the day after processed to release.

Last Updated:June 25, 2014
When is “after DDBJ periodic release” specifically? ARSA getentry search

After DDBJ periodical release means the day after the cutoff date of the release. Release deadline is described in the release notes. For example, in the case of Release 67, cutoff date is August 25, 2006 as follows. Therefore, "after DDBJ periodic release" will be after August 26, 2006.

The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank (*), and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of August 25, 2006. (Rel. 67 excerpt from release notes, omitted below)

Last Updated:October 4, 2017
I did not obtain the search results that I was expecting. Did I make a mistake in conducting my search? ARSA BLAST getentry search
The DDBJ/EMBL/GenBank data banks share the sequences stored within each data bank, and in principle all three data banks should contain the same data. However, due to time delays in the inter-data-bank sharing of data released by individual data banks, as well as delays between the time at which data are entered into a data bank and the time at which the data are reflected in the corresponding search service, searches conducted using different services at the similar time on the same day may yield slightly different results. If you do not obtain the search results that you were expecting, time delays of this sort are the most likely culprit; however, for cases requiring a more detailed investigation, please contact us via “Other” section of web form. In this case, make sure to specify the following information:
  • The name of the search program and/or the URL that you used to conduct the search.
  • The search conditions that you used.
  • The date and time at which you conducted the search.
  • Accession number of the entry that should have been found.
  • URL of the search results.
  • Any other relevant information.
Also, please see the sections of this document corresponding to the following questions.
Last Updated:September 8, 2017
Is there a way to link directly to data (accession numbers) registered in the DDBJ? getentry search
Last Updated:July 5, 2017
How do I get a FASTA format of WGS, TSA, or TLS entries? getentry search

To get a FASTA format of WGS, TSA, or TLS entries, please use "getentry", specifying the following values.

 ID : Specify the Accession Number.
 Output format : Select "total nt seq FASTA" for the result.
 Result : Select one from the following filetype for the output.

  • html
  • text
  • compress (gz)
 Limit : Set an upper limit number of the result.
               When you specify the Limit "0", there is no upper limit of the data acquisition.

For more information about each value, please see getenry HELP.

Please see the following video as well.

Last Updated:September 8, 2017
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