Database Search

getentry
Data retrieval by accession numbers, etc.
ARSA
All-round Retrieval of Sequence and Annotation
TXSearch
Retrieval of unified taxonomy database
BLAST
Homology Search
DDBJ Vector Screening System

Phylogenetics

ClustalW
Multiple alignment and Tree-making

Submission of Gene Expression Data

CIBEX    ※suspended
Gene expression DB, data submission and search by MIAME as intenational guide line

Genome Analyses

GIB    ※suspended
Genome information broker
GIB-V    ※suspended
GIB for Viruses
MiGAP
Mechanical annotation tool for microbial genomes
(Login ID is required.)
MiGAP-OLD (Result before Feb. 2012. Read-only)
To login, DBCLS OpenID is required.
GTPS
Reannotation of bacterial genomes using a new common protocol
GTOP
Genome to protein structure and function

Next Generation Sequence Analysis

DDBJ Read Annotation Pipeline
High-throughput data analysis of next generation sequence data (Login ID is required)

Protein Database and Structure

PMD
Protein mutant database

Software developed at CIB-DDBJ

WINA
A Window Analysis Program for the Number of Synonymous and Nonsynonymous Nucleotide



Comments are closed.