Search and Analysis
Database Search
- getentry
- Data retrieval by accession numbers, etc.
- ARSA
- All-round Retrieval of Sequence and Annotation
- TXSearch
- Retrieval of unified taxonomy database
- BLAST
- Homology Search
- DDBJ Vector Screening System
- Vector Search to screen contamination in nucleic acid sequences.
- DRA Search
- Search metadata by keywords and retrieve data
Phylogenetics
- ClustalW
- Multiple alignment and Tree-making
Submission of Gene Expression Data
- CIBEX ※suspended
- Gene expression DB, data submission and search by MIAME as intenational guide line
Genome Analyses
- GIB ※suspended
- Genome information broker
- GIB-V ※suspended
- GIB for Viruses
- MiGAP
- Mechanical annotation tool for microbial genomes(Login ID is required.)
- MiGAP-OLD (Result before Feb. 2012. Read-only)
- To login, DBCLS OpenID is required.
- GTPS
- Reannotation of bacterial genomes using a new common protocol
- GTOP
- Genome to protein structure and function
Next Generation Sequence Analysis
- DDBJ Read Annotation Pipeline
- High-throughput data analysis of next generation sequence data (Login ID is required)
Protein Database and Structure
- PMD
- Protein mutant database
Software developed at CIB-DDBJ
- WINA
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- A Window Analysis Program for the Number of Synonymous and Nonsynonymous Nucleotide
