Search and Analysis

Database Search

getentry
Data retrieval by accession numbers, etc.
ARSA
All-round Retrieval of Sequence and Annotation
TXSearch
Retrieval of unified taxonomy database
BLAST
Homology Search
VecScreen
Vector Search to screen contamination in nucleic acid sequences.
DRA Search
Search metadata by keywords and retrieve data

Phylogenetics

ClustalW
Multiple alignment and Tree-making

Protein Database and Structure

PMD
Protein mutant database

Next Generation Sequence Analysis

DDBJ Read Annotation Pipeline
High-throughput data analysis of next generation sequence data (Login ID is required)

Genome Analyses

MiGAP
Mechanical annotation tool for microbial genomes(Login ID is required.)
MiGAP-OLD (Result before Feb. 2012. Read-only)
To login, DBCLS OpenID is required.
GTPS
Reannotation of bacterial genomes using a new common protocol
GTOP
Genome to protein structure and function

Links for DBCLS* Search Tools

AOE
Statistics and trends of SRA data
DBCLS SRA
Statistics and trends of SRA data
Gendoo
Functional profiling of gene and disease features for omics analysis
GGGenome
A ultrafast sequence search
GGRNA
A Google-like, ultrafast search engine for genes and transcripts
RefEx
Reference Expression dataset for tissue transcriptome

*DBCLS : Database Center for Life Science

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