Search and Analysis

Database Search

getentry
Data retrieval by accession numbers, etc.
ARSA
All-round Retrieval of Sequence and Annotation
TXSearch
Retrieval of unified taxonomy database
BLAST
Homology Search
VecScreen
Vector Search to screen contamination in nucleic acid sequences.
DRA Search
Search metadata by keywords and retrieve data

Phylogenetics

ClustalW
Multiple alignment and Tree-making

Submission of Gene Expression Data

CIBEX    ※suspended
Gene expression DB, data submission and search by MIAME as intenational guide line

Genome Analyses

GIB    ※suspended
Genome information broker
GIB-V    ※suspended
GIB for Viruses
MiGAP
Mechanical annotation tool for microbial genomes(Login ID is required.)
MiGAP-OLD (Result before Feb. 2012. Read-only)
To login, DBCLS OpenID is required.
GTPS
Reannotation of bacterial genomes using a new common protocol
GTOP
Genome to protein structure and function

Next Generation Sequence Analysis

DDBJ Read Annotation Pipeline
High-throughput data analysis of next generation sequence data (Login ID is required)

Protein Database and Structure

PMD
Protein mutant database

Software developed at CIB-DDBJ

WINA
A Window Analysis Program for the Number of Synonymous and Nonsynonymous Nucleotide

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