Activities
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DDBJ Data Analysis Challenge
- Training
"DDBJ Data Analysis Challenge" is a machine learning competition using "'International Nucleotide... -
The SEGO will be held at [National Institute of Genetics (NIG)](//www.nig.ac.jp/nig/) in Japan on...
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## 2nd DDBJ Supercomputer Training & Educational Program training session {#dstep} - Date : Ju...
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## 7th with Japan-Vietnam Workshop {#d-7} This workshop was held as a data scientist training se...
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## 8th D-STEP with Japan-Thailand Workshop {#d-8} This workshop was held as a data scientist tra...
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## 9th D-STEP with Japan-Malaysia Workshop {#d-9} This workshop was held as a data scientist tra...
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Ara T, Kodama Y, Tokimatsu T, Fukuda A, Kosuge T, Mashima J, Tanizawa Y, Tanjo T, Ogasawara O, Fujisawa T, Nakamura Y, Arita M.
Nucleic Acids Res 2024 Jan 5;52(D1):D67-D71 Pubmed: 37971299
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Hachiya T, Ishii M, Kawai Y, Khor SS, Kawashima M, Toyo-Oka L, Mitsuhashi N, Fukuda A, Kodama Y, Fujisawa T, Tokunaga K, Takagi T.
Hum Genome Var 2022 Dec 20;9(1):48 Pubmed: 36539398
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Sakurai N, Yamazaki S, Suda K, Hosoki A, Akimoto N, Takahashi H, Shibata D, Aoki Y.
Nucleic Acids Res 2023 Jan 6;51(D1):D660-D677 Pubmed: 36417935
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Tanizawa Y, Fujisawa T, Kodama Y, Kosuge T, Mashima J, Tanjo T, Nakamura Y.
Nucleic Acids Res 2023 Jan 6;51(D1):D101-D105 Pubmed: 36420889
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Okido T, Kodama Y, Mashima J, Kosuge T, Fujisawa T, Ogasawara O.
Nucleic Acids Res 2022 Jan 7;50(D1):D102-D105 Pubmed: 34751405
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Chisato Yamasaki, Satoshi Nagaie, Minae Kawashima, Chihiro Hata, Shuichi Kawashima, Yuichi Kodama, Mizuki Morita, Natsuko Yamamoto, Akio Nagano, Keiko Katsui, Takako Takai, Soichi Ogishima
GA4GH 8th Plenary Meeting
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Fukuda A, Kodama Y, Mashima J, Fujisawa T, Ogasawara O
Nucleic Acids Res 2021 Jan 8;49(D1):D71-D75 Pubmed: 33156332
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Arita M, Karsch-Mizrachi I, Cochrane G
Nucleic Acids Res 2021 Jan 8;49(D1):D121-D124. Pubmed: 33166387
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Vos RA, Katayama T, Mishima H, Kawano S, Kawashima S, Kim JD, Moriya Y, Tokimatsu T, Yamaguchi A, Yamamoto Y et al
F1000Res 2020 Feb 24;9:136. Pubmed: 32308977
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Kaminuma E, Baba Y, Mochizuki M, Matsumoto H, Ozaki H, Okayama T, Kato T, Oki S, Fujisawa T, Nakamura Y et al
Genes Genet Syst 2020 Mar 26;():. Pubmed: 32213716
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Ogasawara O, Kodama Y, Mashima J, Kosuge T, Fujisawa T
Nucleic Acids Res 2020 Jan 8;48(D1):D45-D50. Pubmed: 31724722
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Tanizawa Y, Fujisawa T, Arita M, Nakamura Y
Methods Mol Biol 2019;1962():215-226. Pubmed: 31020563
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Katayama T, Kawashima S, Okamoto S, Moriya Y, Chiba H, Naito Y, Fujisawa T, Mori H, Takagi T
Database (Oxford) 2019 Jan 1;2019():. Pubmed: 30624651
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Kodama Y, Mashima J, Kosuge T, Ogasawara O
Nucleic Acids Res 2019 Jan 8;47(D1):D69-D73. Pubmed: 30357349
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Oki S, Ohta T, Shioi G, Hatanaka H, Ogasawara O, Okuda Y, Kawaji H, Nakaki R, Sese J, Meno C
EMBO Rep 2018 Dec;19(12):. Pubmed: 30413482
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Iida N, Okuda Y, Ogasawara O, Yamashita S, Takeshima H, Ushijima T
Epigenomics 2018 Mar;10(3):249-258. Pubmed: 29343101
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Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A et al
Nat Biotechnol 2019 Jan;37(1):29-37. Pubmed: 30556814
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Mashima J, Kodama Y, Fujisawa T, Katayama T, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T
Nucleic Acids Res 2018 Jan 4;46(D1):D30-D35. Pubmed: 29040613
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DNA Data Bank of Japan.
- Paper
Mashima J, Kodama Y, Fujisawa T, Katayama T, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T
Nucleic Acids Res 2017 Jan 4;45(D1):D25-D31. Pubmed: 27924010
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Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, Okuda Y, Kaminuma E, Ogasawara O, Okubo K et al
Nucleic Acids Res 2016 Jan 4;44(D1):D51-7. Pubmed: 26578571
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Cochrane G, Karsch-Mizrachi I, Takagi T
Nucleic Acids Res 2016 Jan 4;44(D1):D48-50. Pubmed: 26657633
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Kodama Y, Mashima J, Kosuge T, Katayama T, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y
Nucleic Acids Res 2015 Jan;43(Database issue):D18-22. Pubmed: 25477381
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Federhen S, Clark K, Barrett T, Parkinson H, Ostell J, Kodama Y, Mashima J, Nakamura Y, Cochrane G, Karsch-Mizrachi I
Stand Genomic Sci 2014 Jun 15;9(3):1275-7. Pubmed: 25197497
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Kosuge T, Mashima J, Kodama Y, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y
Nucleic Acids Res 2014 Jan;42(Database issue):D44-9. Pubmed: 24194602
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Nagasaki H, Mochizuki T, Kodama Y, Saruhashi S, Morizaki S, Sugawara H, Ohyanagi H, Kurata N, Okubo K, Takagi T et al
DNA Res 2013 Aug;20(4):383-90. Pubmed: 23657089
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Ogasawara O, Mashima J, Kodama Y, Kaminuma E, Nakamura Y, Okubo K, Takagi T
Nucleic Acids Res 2013 Jan;41(Database issue):D25-9. Pubmed: 23180790
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Nakamura Y, Cochrane G, Karsch-Mizrachi I
Nucleic Acids Res 2013 Jan;41(Database issue):D21-4. Pubmed: 23180798
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Kodama Y, Mashima J, Kaminuma E, Gojobori T, Ogasawara O, Takagi T, Okubo K, Nakamura Y
Nucleic Acids Res 2012 Jan;40(Database issue):D38-42. Pubmed: 22110025
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Karsch-Mizrachi I, Nakamura Y, Cochrane G
Nucleic Acids Res 2012 Jan;40(Database issue):D33-7. Pubmed: 22080546
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Kodama Y, Shumway M, Leinonen R
Nucleic Acids Res 2012 Jan;40(Database issue):D54-6. Pubmed: 22009675
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Leinonen R, Sugawara H, Shumway M
Nucleic Acids Res 2011 Jan;39(Database issue):D19-21. Pubmed: 21062823
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DDBJ progress report.
- Paper
Kaminuma E, Kosuge T, Kodama Y, Aono H, Mashima J, Gojobori T, Sugawara H, Ogasawara O, Takagi T, Okubo K, Nakamura Y.
Nucleic Acids Res 2011 Jan;39(Database issue):D22-7. Pubmed: 21062814
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Cochrane G, Karsch-Mizrachi I, Nakamura Y
Nucleic Acids Res 2011 Jan;39(Database issue):D15-8. Pubmed: 21106499
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Kodama Y, Kaminuma E, Saruhashi S, Ikeo K, Sugawara H, Tateno Y, Nakamura Y
Adv Exp Med Biol 2010;680():125-35. Pubmed: 20865494
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Shumway M, Cochrane G, Sugawara H
Nucleic Acids Res 2010 Jan;38(Database issue):D870-1. Pubmed: 19965774
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Kaminuma E, Mashima J, Kodama Y, Gojobori T, Ogasawara O, Okubo K, Takagi T, Nakamura Y
Nucleic Acids Res 2010 Jan;38(Database issue):D33-8. Pubmed: 19850725
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Kwon Y, Shigemoto Y, Kuwana Y, Sugawara H
Nucleic Acids Res 2009 Jul;37(Web Server issue):W11-6. Pubmed: 19417067
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Sugawara H, Ikeo K, Fukuchi S, Gojobori T, Tateno Y
Nucleic Acids Res 2009 Jan;37(Database issue):D16-8. Pubmed: 18927114
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Yuichi Kodama, Asami Fukuda, Tsuyoshi Hachiya, Chihiro Hata, Jun Mashima, Takatomo Fujisawa, Minae Kawashima, Licht Toyo-oka, Nobutaka Mitsuhashi and Osamu Ogasawara
The Annual Meeting of the American Society of Human Genetics 2019
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Yasukazu Nakamura
CODATA: the next-generation data-driven science
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We are ready to 10 k microbe genomes
- Presentation
Yasukazu Nakamura
A high-level CODATA data policy meeting
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DDBJ and the INSDC are faced with Big Data
- Presentation
Yasukazu Nakamura
IUBS 2019
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ynlab & DDBJ’s activities
- Presentation
Yasukazu Nakamura
GOBii Workshop
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DDBJ: Asian gateway to the INSDC
- Presentation
Yasukazu Nakamura
NAGP Bioinformtion center workshop 2019
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DDBJ (DNA Data Bank of Japan) activity
- Presentation
Toshihisa Okido, Yuichi Kodama, Takehide Kosuge, Jun Mashima
Biocuration2019
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Chromosome-scale assemblies are coming back
- Presentation
Yasukazu Nakamura
The Asian Bioinformatics Consortium (ABC) Symposium
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Yasukazu Nakamura
Plant and Animal Genome conference 2019
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Yasukazu Nakamura
8th World Data Center for Microorganisms (WDCM) / Global Catalogue of Microorganisms GCM 2.0 10K type strain microbe sequencing project meeting
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DDBJ / the INSDC is ready for GCM 2.0
- Presentation
Yasukazu Nakamura
8th WDCM / GCM 2.0 meeting
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Resources for archiving, sharing and analysis of controlled-access human data at DDBJ Center.
- Presentation
Kodama Yuichi
The Annual Meeting of the American Society of Human Genetics 2018
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DDBJ: Asian gateway to the INSDC
- Presentation
Yasukazu Nakamura
Agricultural Bioscience International Conference 2018
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Yasukazu Nakamura
The 16th KJC Bioinformatics Symposium
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Yasukazu Nakamura
DDBJ D-step training course 2018
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DDBJ/INSDC/DFAST
- Presentation
Yasukazu Nakamura
GCM 2.0 workshop
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Yasukazu Nakamura
PAGXXVI
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Yasukazu Nakamura
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Yuichi Kodama, Asami Nozaki, Jun Mashima, Mari T. Minowa, Minae Kawashima, Kazunori Miyazaki, Nobutaka Mitsuhashi, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi
The Annual Meeting of the American Society of Human Genetics 2017
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DDBJ and the INSDC
- Presentation
Yasukazu Nakamura
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DDBJ
- Presentation
Yasukazu Nakamura
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How to make bio-DB’s and services sustainable?
- Presentation
Yasukazu Nakamura
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JGA: Japanese Genotype-phenotype Archive
- Presentation
Yuichi Kodama, Jun Mashima, Mari T. Minowa, Minae Kawashima, Kazunori Miyazaki, Nobutaka Mitsuhashi, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi
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Database Resources of DNA Data Bank of Japan
- Presentation
Yuichi Kodama, Jun Mashima, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi
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DNA Data Bank of Japan: trad and new databases
- Presentation
Yasukazu Nakamura
Information Sources in Biotechnology: Key Databases for Patenting Biotechnology. A seminar organized by The European Bioinformatics Institute and FCO Science and Innovation Network July 24,2012
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DDBJ Sequence Read Archive and a cloud-computing based annotation tool for new-generation sequencing data
- Presentation
Nagasaki, H.,Mochizuki, T.,Kaminuma, E.,Kodama Y.,Saruhashi, S.,Toshihisa, T.,Okubo, K.,Nakamura Y.
The International Plant & Animal Genome XX Conference
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DDBJ Sequence Read Archive and a cloud-computing based analytical pipeline for next-generation sequencing reads
- Presentation
Satoshi Saruhashi, Takako Mochizuki, Hideki Nagasaki, Yuichi Kodama, Asami Nozaki, Kyung-Bum Lee, Toshihisa Okido, Emi Yokoyama, Eli Kaminuma, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
SOL&ICuGI 2011: 8th Solanaceae and 2nd Cucurbitaceae Genome Joint Conference
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DDBJ Sequence Read Archive and a cloud-computing based annotation tool for next-generation sequencing data
- Presentation
Hideki Nagasaki, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Toshihisa Takagi, Kousaku Okubo, Eli Kaminuma, Yasukazu Nakamura
The 2nd International Conference on the Progress of “1000 Plant & Animal Reference Genomes Project”
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DDBJ Read Annotation Pipeline: A cloud based pipeline for high-throughput analysis of next generation sequencing data
- Presentation
Nagasaki, H., Mochizuki, T., Watanabe S., Morizaki, S., Kodama Y., Saruhashi, S., Takagi T., Okubo K., Kaminuma E., Nakamura, Y.
Plant and Animal Genome XIX Conference
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DDBJ Read Annotation Pipeline: A Cloud Computing Based Analytical Tool for Next-generation Sequencing Data
- Presentation
Yasukazu Nakamura
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DDBJ Sequence Read Archive / DDBJ Omics Archive
- Presentation
Yuichi Kodama, Saruhashi Satoshi, Eli Kaminuma,Hideaki Sugawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura
4th Biocuration Conference
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DDBJ Sequence Read Annotation Pipeline; A cloud computing-based analytical tool for next-generation sequencing data
- Presentation
Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
10th Cold Spring Harbor Laboratory/Wellcome Trust conference on Genome Informatics
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Yuichi Kodama
13th International MGED Meeting
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DDBJ Read Annotation Pipeline: A web-based analytical tool for next-generation sequencing data
- Presentation
Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
18th Annual International Conference on Intelligent Systems for Molecular Biology(ISMB2010)
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Plant SNP annotation using a web-based pipeline tool for next-generation sequencing data
- Presentation
Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
The 21th International Conference on Arabidopsis Research
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Satoshi Saruhashi, Yuichi Kodama, Eli Kaminuma, Takashi Gojobori, Toshihisa Takagi, Kousaku Okubo, Hideaki Sugawara, Yasukazu Nakamura
The 5th NIG Poster Workshop
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Takehide Kosuge, Takako Mochizuki, *Shigeki Watanabe, Jun Mashima, Eli Kaminuma, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
The 5th NIG Poster Workshop
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Takako Mochizuki, Eli Kaminuma, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
The 5th NIG Poster Workshop
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Eli Kaminuma, Yuichi Kodama, Satoshi Saruhashi, Takeshi Konno, Takako Mochizuki, Hidemasa Bono, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
The 20th International Conference on Genome Informatics
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Takehide Kosuge, Yasumasa Shigemoto, Yoshikazu Kuwana, Hideaki Sugawara
The 20th International Conference on Genome Informatics
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Hidemasa Bono, Eli Kaminuma, Yuichi Kodama, Yasukazu Nakamura, Kousaku Okubo, Toshihisa Takagi
12th International MGED Meeting
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CIBEX
- Presentation
Yuichi Kodama, Yoshio Tateno, Kazuho Ikeo
12th International MGED Meeting
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DNA Data Bank of Japan, DDBJ
- Presentation
Kyungbum Lee
Korean Bioinformation Center (KOBIC)
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Eli Kaminuma, Yasukazu Nakamura, Toshihisa Takagi
The 4th NIG Poster Workshop May
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Jun Mashima, Takehide Kosuge, Toshihisa Okido, Yuichi Kodama, Kazuho Ikeo, Hideaki Sugawara, Yoshio Tateno, Takeshi Gojobori
The 3rd International Biocuration Conference
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FY2023
- Annual report
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FY2022
- Annual report
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FY2021
- Annual report
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FY2020
- Annual report
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FY2019
- Annual report
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FY2018
- Annual report
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FY2017
- Annual report
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FY2016
- Annual report
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FY2015
- Annual report
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FY2014
- Annual report
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FY2013
- Annual report
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FY2012
- Annual report
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FY2011
- Annual report
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FY2010
- Annual report
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18th INSDC meeting report: May 16-18 2005, Mishima, Japan
- INSDC meeting report
## 2005 ## 18th INSDC meeting report: May 16-18 2005, Mishima, Japan To operate and implement... -
19th INSDC meeting report: May 15-17 2006, Bethesda, USA
- INSDC meeting report
## 2006 ## 19th INSDC meeting report: May 15-17 2006, Bethesda, USA International Nucleotide ... -
20th INSDC meeting report: May 21-23 2007, Hinxton, UK
- INSDC meeting report
## 2007 ## 20th INSDC meeting report: May 21-23 2007, Hinxton, UK International Nucleotide Se... -
21st INSDC meeting report: May 20-22 2008, Mishima, Japan
- INSDC meeting report
## 2008 ## 21st INSDC meeting report: May 20-22 2008, Mishima, Japan International Nucleotide... -
22nd INSDC meeting report: May 12-15 2009, Bethesda, USA
- INSDC meeting report
## 2009 ## 22nd INSDC meeting report: May 12-15 2009, Bethesda, USA International Nucleotide ... -
23rd INSDC meeting report: May 19-21 2010, Hinxton, UK
- INSDC meeting report
## 2010 ## 23rd INSDC meeting report: May 19-21 2010, Hinxton, UK International Nucleotide Se... -
24th INSDC meeting report: May 23-27 2011, Osaka, Japan
- INSDC meeting report
## 2011 ## 24th INSDC meeting report: May 23-27 2011, Osaka, Japan [International Nucleotide S... -
25th INSDC meeting report: June 11-13 2012, Bethesda, USA
- INSDC meeting report
## 2012 ## 25th INSDC meeting report: June 11-13 2012, Bethesda, USA [International Nucleotid... -
26th INSDC meeting report: May 21-23 2013, Hinxton, UK
- INSDC meeting report
## 2013 ## 26th INSDC meeting report: May 21-23 2013, Hinxton, UK [International Nucleotide S... -
27th INSDC meeting report: May 20-22 2014, Mishima, Japan
- INSDC meeting report
## 2014 ## 27th INSDC meeting report: May 20-22 2014, Mishima, Japan [International Nucleotid... -
28th INSDC meeting report: May 19-21 2015, Bethesda, USA
- INSDC meeting report
## 2015 ## 28th INSDC meeting report: May 19-21 2015, Bethesda, USA [International Nucleotide ... -
29th INSDC meeting report: May 16-18 2016, Hinxton, UK
- INSDC meeting report
## 2016 ## 29th INSDC meeting report: May 16-18 2016, Hinxton, UK [International Nucleotide Se... -
30th INSDC meeting report: May 24-26 2017, Mishima, Japan
- INSDC meeting report
## 2017 ## 30th INSDC meeting report: May 24-26 2017, Mishima, Japan [International Nucleotid... -
31st INSDC meeting report: May 15-17 2018, Bethesda, USA
- INSDC meeting report
## 2018 ## 31st INSDC meeting report: May 15-17 2018, Bethesda, USA [International Nucleotide... -
32nd INSDC meeting report: May 15-17 2019, Hinxton, UK
- INSDC meeting report
## 2019 ## 32nd INSDC meeting report: May 15-17 2019, Hinxton, UK [International Nucleotide S... -
33rd INSDC meeting report: June 1-5 2020, teleconference
- INSDC meeting report
## 2020 ## 33rd INSDC meeting report: June 1-5 2020, teleconference [International Nucleotide... -
34th INSDC meeting report: May 10-14 2021, teleconference
- INSDC meeting report
## 2021 ## 34th INSDC meeting report: May 10-14 2021, teleconference [International Nucleotid... -
35th INSDC meeting report: May 23-27 2022, teleconference
- INSDC meeting report
## 35th INSDC meeting report: May 23-27 2022, teleconference [International Nucleotide Sequence ... -
36th INSDC meeting report: May 23-25 2023, Mishima, Japan
- INSDC meeting report
## 36th INSDC meeting report: May 23-25 2023, Mishima, Japan [International Nucleotide Sequence ... -
37th INSDC meeting report: June 4-6 2024, Bethesda, USA
- INSDC meeting report
## 37th INSDC meeting report: June 4-6 2024, Bethesda, USA [International Nucleotide Sequence Da...