Redistribution of genomic sequence (build 3) of the cultivar Nipponbare of Oryza sativa ssp. japonica assigned with RAP annotation

The entries corresponding to complete sequences of japonica rice chromosomes were updated. Their accession numbers are AP008207-AP008218. The updated contents were the results annotated by The First Rice Annotation Project Meeting (RAP1) which was an international rice genome annotation project organized by Japanese research groups.

By this updating, AP008207-AP008218 entries were redistributed with approximately 26,800 CDS (protein coding region) features.

This data can be acquired from the following sites.

accession numbers: AP008207-AP008218 (12 entries)

anonymous FTP: Oryza_sativa_Japonica_Group_PLN_060831_1.seq.gz
getentry: http://getentry.ddbj.nig.ac.jp/top-e.html

The result of RAP1 annotation has also been available in the Rice Annotation Project Database (RAP-DB) at the National Institute of Genetics.

(References)

IRGSP (International Rice Genome Sequencing Project)
DDBJ HP :Link to Other web pages on Information Biology (databases for Rice)