- Methanococcus maripaludis C5 (by Joint Genome Institute)
- Saccharopolyspora erythraea NRRL 2338 (by University of Cambridge)
- Francisella tularensis subsp. tularensis WY96-3418 (by UT Southwestern Medical Center)
- Desulfotomaculum reducens MI-1 (by Joint Genome Institute)
- Burkholderia vietnamiensis G4 (by Joint Genome Institute)
- Herminiimonas arsenicoxydans (by Genoscope)
- Geobacillus thermodenitrificans NG80-2 (by Nankai University)
- Corynebacterium glutamicum R (by RITE)
- Aeromonas salmonicida subsp. salmonicida A449 (by NRC Institute for Marine Biosciences)
- Prosthecochloris vibrioformis DSM 265 (by Joint Genome Institute)
- Polynucleobacter sp. QLW-P1DMWA-1 (by Joint Genome Institute)
- Yersinia pestis Pestoides F (by Joint Genome Institute)
- Mycobacterium gilvum PYR-GCK (by Joint Genome Institute)
- Pyrobaculum arsenaticum DSM 13514 (by Joint Genome Institute)
- Rhodobacter sphaeroides ATCC 17025 (by Joint Genome Institute)
- Salinispora tropica CNB-440 (by Joint Genome Institute)
- Enterobacter sp. 638 (by Joint Genome Institute)
- Pseudomonas stutzeri A1501 (by Joint Genome Institute)
- Caldicellulosiruptor saccharolyticus DSM 8903 (by Joint Genome Institute)
- Pseudomonas mendocina ymp (by Joint Genome Institute)
- Shewanella putrefaciens CN-32 (by Joint Genome Institute)