MetaboBank
Metadata
MAGE-TAB
MicroArray Gene Expression Tabular (MAGE-TAB) was developed to represent functional genomics data in a structured way and has been used by ArrayExpress and GEA. MAGE-TAB is also used in proteomics fields and is becoming a standard in omics fields.
MAGE-TAB consists of two parts, IDF and SDRF. IDF describes study design, and SDRF describes sample characteristics and relationship between sample and data files. IDF and SDRF are linked by protocols. Metadata and data files are linked by SDRF.
Metadata excel
Download a metadata excel file designed for each submission type and fill in the file. Submit data of different types as separate studies.
- Mass spectrometry, chromatography
- Liquid chromatography-mass spectrometry (LC-MS, download)
- Liquid chromatography, diode array detector-mass spectrometry (LC-DAD-MS, download)
- Gas chromatography-mass spectrometry (GC-MS, download)
- Two dimensional gas chromatography-mass spectrometry (GCGC-MS, download)
- Gas chromatography, flame ionization detector-mass spectrometry (GC-FID-MS, download)
- Capillary electrophoresis-mass spectrometry (CE-MS, download)
- Mass spectrometry, direct injection
- Mass spectrometry imaging (MSI, download)
- Nuclear magnetic resonance spectroscopy (NMR, download)
IDF
IDF (Investigation Description Format) is a file describing study overview, experimental design, protocols, publication and submitter information.
Please see the HELP sheet of the excel for details.
SDRF
SDRF (Sample and Data Relationship Format) is a file describing sample characteristics and relationship between samples, measurement instruments and data files. SDRF is a table represents omics experimental flow, starts from source samples and ends with data files.
Please see the HELP sheet of the excel for details.
