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BioSample

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Sample attributes

Sample attributes

Sample type (Core Package)

Standard
- SARS-CoV-2: clinical or host-associated
- SARS-CoV-2: wastewater surveillance
- Microbe
- Model organism or animal
- Metagenome or environmental
- Invertebrate
- Human
- Plant
- Virus
- Beta-lactamase
- Omics
Pathogen
- Pathogen: clinical or host-associated
- Pathogen: environmental/food/other
Genome, metagenome or marker sequences (MIxS compliant)
- MIGS Cultured Bacterial/Archaeal Genomic Sequences (MIGS.ba)
- Eukaryotic Genomic Sequences (MIGS.eu)
- Viral Genomic Sequences (MIGS.vi)
- Environmental/Metagenome Genomic Sequences (MIMS.me)
- Metagenome-assembled Genome Sequences (MIMAG)
- Single Amplified Genome Sequences (MISAG)
- Specimen Marker Sequences (MIMARKS.specimen)
- Survey related Marker Sequences (MIMARKS.survey)
- Uncultivated Viral Genome Sequences (MIUVIG)

Environmental package (MIxS Sample)

No package
air
built
host-associated
human-associated
human-gut
human-oral
human-skin
human-vaginal
microbial mat/biofilm
miscellaneous or artificial
plant-associated
sediment
soil
wastewater/sludge
water

After selecting the relevant Sample type, click the DEFINITION button to review the definitions and formats of attribute. See definition in the table BioSample example submission files are available for several packages
*: Required
**number: At least one attribute is required in attributes

Sample submission by data type

Genome Assembly Sample
Metagenome Assembly
Single amplified genome
Pseudohaplotype
Human Sample