Validator error message

In this site, error messages outputted from checking tools for nucleotide sequence data submission are briefly explained.
If you find any error message, please make some appropriate correction.
If you have any problems and/or questions, please contact us with error messages.

Parser

Format

[Code Number]:[Level]:[Type]:[File]:[Region]:[Body Text]

Code Number	Indicate the code number of the message
Level	Indicate the level of the message
	ER1	Type 1 error of the file format. Correction is required.
	ER2	Type 2 error of the file format. Correction is required.
	FAT	Fatal error, related to system environment.
	WAR	Warning for the file format. Correction is sometimes required.
	MES	Reference message for some other error(s).
Type	Indicate the category of the message
	STX	Syntax
	SYS	Related to the checking performance
	LOC	Compare between sequence and location
File	Indicate the file occurred the problem
	ANN	Annotation file
	SEQ	Sequence file
	AxS	Comparison between Annotation and Sequence files
Region	Indicate the region of the error as line number and/or entry name
Body Text	Detail descriptions of the message

Error messeages

Terms and numbers closed with brackets ( [ and ] ) and started from #, are substituted by each real value that is used in your submission.

Terms closed with brackets ( [ and ] ) and not started from # are the reserved words for features or qualifiers.

List of Parser error messeages

TransChecker Error Messages

Format

[Code Number]:[Level]: [Body Text]

Code Number	Indicate the code number of the message
Level	Indicate the level of the message
	ER2	Type 2 error of the file format. Correction is required.
	FAT	Fatal error, related to system environment.
	WAR	Warning for the file format. Correction is sometimes required.
Body Text	Detail descriptions of the message

ex)

>entry1.1 <1..>366
TC0020:WAR: [codon_start] qualifier should be selected. The value is automatically set 1. 
TC0020:WAR: [transl_table] qualifier should be selected. The value is automatically set 1. 
//
>entry2.3 4315..4997
TC0017:ER2: First codon [cct] is not a start codon.
TC0018:ER2: Final codon [cat] is not a stop codon.
TC0019:ER2: Stop codon is found in mid of CDS location.
//

Error message

Terms and numbers closed with brackets ( [ and ] ) and started from #, are substituted by each real value that is used in your submission.

Terms closed with brackets ( [ and ] ) and not started from # are the reserved words for features or qualifiers.

List of trans Checker error message

AGP Parser Error Messages

Format

[Code Number]:[Level]:[Region]:[Body Text] or [Code Number]:[Level]:[Body Text]

Code Number	Indicate the code number of the message
Level	Indicate the level of the message
	FAT	Fatal error, related to system environment.
	ER1	Type 1 error of the file format. Correction is required.
	ER2	Type 2 error of the file format. Correction is required.
	WAR	Warning for the file format. Correction is sometimes required.
Region	Indicate the region of the error as line number or object name
Body text	Detail descriptions of the message

Error message

Terms and numbers closed with brackets ( [ and ] ) and started from #, are substituted by each real value that is used in your submission.

You can search explanations for AGPParser error messages by selecting error code from followings;

List of AGP Parser error message