DDBJ Annotated/Assembled Sequences
Validator error message
In this site, error messages outputted from checking tools for nucleotide sequence data submission are briefly explained.
If you find any error message, please make some appropriate correction.
If you have any problems and/or questions, please contact us with error messages.
Parser
Format
[Code Number]:[Level]:[Type]:[File]:[Region]:[Body Text]
Code Number | Indicate the code number of the message | |
---|---|---|
Level | Indicate the level of the message | |
ER1 | Type 1 error of the file format. Correction is required. | |
ER2 | Type 2 error of the file format. Correction is required. | |
FAT | Fatal error, related to system environment. | |
WAR | Warning for the file format. Correction is sometimes required. | |
MES | Reference message for some other error(s). | |
Type | Indicate the category of the message | |
STX | Syntax | |
SYS | Related to the checking performance | |
LOC | Compare between sequence and location | |
File | Indicate the file occurred the problem | |
ANN | Annotation file | |
SEQ | Sequence file | |
AxS | Comparison between Annotation and Sequence files | |
Region | Indicate the region of the error as line number and/or entry name | |
Body Text | Detail descriptions of the message |
Error messeages
Terms and numbers closed with brackets ( [ and ] ) and started from #, are substituted by each real value that is used in your submission.
Terms closed with brackets ( [ and ] ) and not started from # are the reserved words for features or qualifiers.
List of Parser error messeages
TransChecker Error Messages
Format
[Code Number]:[Level]: [Body Text]
Code Number | Indicate the code number of the message | |
---|---|---|
Level | Indicate the level of the message | |
ER2 | Type 2 error of the file format. Correction is required. | |
FAT | Fatal error, related to system environment. | |
WAR | Warning for the file format. Correction is sometimes required. | |
Body Text | Detail descriptions of the message |
ex)
>entry1.1 <1..>366
TC0020:WAR: [codon_start] qualifier should be selected. The value is automatically set 1.
TC0020:WAR: [transl_table] qualifier should be selected. The value is automatically set 1.
//
>entry2.3 4315..4997
TC0017:ER2: First codon [cct] is not a start codon.
TC0018:ER2: Final codon [cat] is not a stop codon.
TC0019:ER2: Stop codon is found in mid of CDS location.
//
Error message
Terms and numbers closed with brackets ( [ and ] ) and started from #, are substituted by each real value that is used in your submission.
Terms closed with brackets ( [ and ] ) and not started from # are the reserved words for features or qualifiers.
List of trans Checker error message
AGP Parser Error Messages
Format
[Code Number]:[Level]:[Region]:[Body Text] or [Code Number]:[Level]:[Body Text]
Code Number | Indicate the code number of the message | |
---|---|---|
Level | Indicate the level of the message | |
FAT | Fatal error, related to system environment. | |
ER1 | Type 1 error of the file format. Correction is required. | |
ER2 | Type 2 error of the file format. Correction is required. | |
WAR | Warning for the file format. Correction is sometimes required. | |
Region | Indicate the region of the error as line number or object name | |
Body text | Detail descriptions of the message |
Error message
Terms and numbers closed with brackets ( [ and ] ) and started from #, are substituted by each real value that is used in your submission.
You can search explanations for AGPParser error messages by selecting error code from followings;
List of AGP Parser error message